View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19165_low_6 (Length: 505)
Name: NF19165_low_6
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 82 - 410
Target Start/End: Complemental strand, 5585510 - 5585182
Alignment:
| Q |
82 |
caataaagcattcacttaataccaacacaaaccattgttctctcnnnnnnnccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5585510 |
caataaagcattcacttaataccaacacaaaccattgttctctctttttttccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
5585411 |
T |
|
| Q |
182 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgctggtcttcctccttaaagtctgcacctgtt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5585410 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgttggtcttcttccttaaagtctgcacctgtt |
5585311 |
T |
|
| Q |
282 |
gttgcagctaaaatgcactctggaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5585310 |
gttgcagctaaaatgcactctggaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctg |
5585211 |
T |
|
| Q |
382 |
gtaacaatattgctgatattgataatatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5585210 |
gtaacaatattgctgatattgataatatt |
5585182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 82 - 410
Target Start/End: Complemental strand, 5590471 - 5590143
Alignment:
| Q |
82 |
caataaagcattcacttaataccaacacaaaccattgttctctcnnnnnnnccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5590471 |
caataaagcattcacttaataccaacacaaaccattgttctctctttttttccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
5590372 |
T |
|
| Q |
182 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgctggtcttcctccttaaagtctgcacctgtt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5590371 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgttggtcttcttccttaaagtctgcacctgtt |
5590272 |
T |
|
| Q |
282 |
gttgcagctaaaatgcactctggaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5590271 |
gttgcagctaaaatgcactctggaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctg |
5590172 |
T |
|
| Q |
382 |
gtaacaatattgctgatattgataatatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5590171 |
gtaacaatattgctgatattgataatatt |
5590143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 294 - 482
Target Start/End: Original strand, 5605201 - 5605389
Alignment:
| Q |
294 |
atgcactctggaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctggtaacaatattg |
393 |
Q |
| |
|
||||| ||||||||||| ||||| || | ||| ||||||| |||||| ||| || || |||| ||| |||||| |||||||||||||||||||| | |
|
|
| T |
5605201 |
atgcattctggaatgccgagggtgactccaaataaacatgctcacagtgctgcggctgacgaggcacttagctgtctattcaaagctggtaacaatatcg |
5605300 |
T |
|
| Q |
394 |
ctgatattgataatattttaattgcatatgaacataagctaagggtggttgaagattatatttatatgcttaaagagtttggtaatact |
482 |
Q |
| |
|
||| |||||||||| |||| ||| |||||||||||||| || ||| |||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
5605301 |
ctgctattgataatgtttttatttcatatgaacataagttatgggaggttgaagattatatttacatgctaaaagagtttggtaatact |
5605389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 294 - 486
Target Start/End: Complemental strand, 5595711 - 5595519
Alignment:
| Q |
294 |
atgcactctggaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctggtaacaatattg |
393 |
Q |
| |
|
||||| ||||||||||| ||||| || | ||||||||||| |||||| ||| || || |||| ||| | ||| ||||| |||||||||||||||| |
|
|
| T |
5595711 |
atgcattctggaatgccgagggtgactccaaacaaacatgctcacagtgctgcggctgacgaggcacttagttatctattcaatgctggtaacaatattg |
5595612 |
T |
|
| Q |
394 |
ctgatattgataatattttaattgcatatgaacataagctaagggtggttgaagattatatttatatgcttaaagagtttggtaatactggtc |
486 |
Q |
| |
|
| | |||||||||| |||| |||||||||||| | || || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5595611 |
cggctattgataatgttttgattgcatatgaatctgagttatgggaggttgaagattatatttatatgcttaaagagtttggtaatactggtc |
5595519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 5585184 - 5585146
Alignment:
| Q |
448 |
attatatttatatgcttaaagagtttggtaatactggtc |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5585184 |
attatatttatatgcttaaagagtttggtaatactggtc |
5585146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 5590145 - 5590107
Alignment:
| Q |
448 |
attatatttatatgcttaaagagtttggtaatactggtc |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5590145 |
attatatttatatgcttaaagagtttggtaatactggtc |
5590107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 5604820 - 5604870
Alignment:
| Q |
135 |
acaatgacttctacaccaactcctccaccaaactactccttagtccctgct |
185 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
5604820 |
acaatgacttctacaccaacccctccaccaaactactcctcactccctgct |
5604870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5586219 - 5586182
Alignment:
| Q |
1 |
ttgtctttcgcagcacaaaatgaataatctcaaaagttat |
40 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5586219 |
ttgtctttcgcagcacaaa--gaataatctcaaaagttat |
5586182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5591180 - 5591143
Alignment:
| Q |
1 |
ttgtctttcgcagcacaaaatgaataatctcaaaagttat |
40 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5591180 |
ttgtctttcgcagcacaaa--gaataatctcaaaagttat |
5591143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University