View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_low_7 (Length: 503)
Name: NF19165_low_7
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 7554479 - 7554641
Alignment:
| Q |
1 |
acgaggcaagatcggaagttggcgatgacggtgccgaagtttaccgcagaggacggtggtgaaaagagttgctgggaacttatccggccattacggcgtc |
100 |
Q |
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| T |
7554479 |
acgaggcaagatcggaagttggcgatgacggtgccgaagtttaccgcagaggacggtggtgaaaagagttgctgggaacttatccggccattacggcgtc |
7554578 |
T |
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| Q |
101 |
ggggaaagtttataagtaacttgaagtcatcctttagaattagatgcatttccattgcttagg |
163 |
Q |
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| T |
7554579 |
ggggaaagtttataagtaacttgaagtcatcctttagaattagatgcatttccattgcttagg |
7554641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 7544701 - 7544863
Alignment:
| Q |
1 |
acgaggcaagatcggaagttggcgatgacggtgccgaagtttaccgcagaggacggtggtgaaaagagttgctgggaacttatccggccattacggcgtc |
100 |
Q |
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| T |
7544701 |
acgaggcaagatcggaagttggcgatgacggtgccgaagtttaccgcggaggacggtggtgaaaagagtttctgggaacttgtccggccattacggcgtc |
7544800 |
T |
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| Q |
101 |
ggggaaagtttataagtaacttgaagtcatcctttagaattagatgcatttccattgcttagg |
163 |
Q |
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| T |
7544801 |
ggggaaagtttatgagtagcttgaagtcatcctttaaaattagatgcatatctattgcttagg |
7544863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 346 - 469
Target Start/End: Original strand, 7554990 - 7555109
Alignment:
| Q |
346 |
acgtacacctacgctttatagttaattgtttactttagagtagtttatggacttacattttgatccttgattcaatcttataagagaaactataattaaa |
445 |
Q |
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| T |
7554990 |
acgtacacctacgctttata----attgtttaccttagagtagtttatagacttacattttgatccttgattcaatcttataagagaaactttaattaaa |
7555085 |
T |
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| Q |
446 |
ttttcactaaataattaagtgaat |
469 |
Q |
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| T |
7555086 |
ttttcactaaataattaagtgaat |
7555109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 7554708 - 7554789
Alignment:
| Q |
230 |
ttctcttacacgactattgattattactccctacagttttttaaattctaaatataagaagaagaagaagaagaaatttcttc |
312 |
Q |
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| T |
7554708 |
ttcttttacacgactattgattattactccctacagttttttaaattctaaatataagaagaagaagaa-aagaaatttcttc |
7554789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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