View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19165_low_8 (Length: 490)

Name: NF19165_low_8
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19165_low_8
NF19165_low_8
[»] chr2 (6 HSPs)
chr2 (193-475)||(28646646-28646928)
chr2 (20-191)||(28646968-28647140)
chr2 (206-259)||(3446800-3446852)
chr2 (206-259)||(4878279-4878331)
chr2 (193-259)||(15939344-15939412)
chr2 (89-138)||(28672338-28672387)
[»] chr3 (5 HSPs)
chr3 (206-259)||(44651930-44651982)
chr3 (212-254)||(48515338-48515379)
chr3 (191-254)||(49443376-49443440)
chr3 (206-259)||(23398941-23398993)
chr3 (193-254)||(5173963-5174025)
[»] chr8 (4 HSPs)
chr8 (206-259)||(31712619-31712671)
chr8 (191-254)||(26823723-26823787)
chr8 (193-259)||(21548444-21548512)
chr8 (206-254)||(38283194-38283241)
[»] chr7 (2 HSPs)
chr7 (206-259)||(12364819-12364871)
chr7 (206-254)||(4886908-4886955)
[»] chr5 (1 HSPs)
chr5 (212-259)||(9125738-9125784)
[»] chr4 (4 HSPs)
chr4 (206-259)||(33933686-33933739)
chr4 (205-254)||(47929314-47929363)
chr4 (206-259)||(54534896-54534949)
chr4 (227-259)||(542764-542796)
[»] chr1 (1 HSPs)
chr1 (206-254)||(29204715-29204762)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 193 - 475
Target Start/End: Complemental strand, 28646928 - 28646646
Alignment:
Q  193 gttcgaaccccgaaccccc--cttctccacatattatatgtgtgaactctagccactaggctacatgacnnnnnnnnnnnnnnnnngaaatactctcttt 290  Q
    |||||||||||  ||||||  |||||||||||||||||||||||| ||||||||||||| |||||||||                  ||| |||||||||    
T  28646928 gttcgaaccccagaccccctacttctccacatattatatgtgtgagctctagccactagactacatgacaaaaaaaaaaaaaaaaacaaa-actctcttt 28646830  T
Q  291 ttagttttctacattctcttttaccactcatccatttatcgaaggaaatcggtgcgggtactacactttaaaaatgagtttcaggatcaatccaatgtat 390  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  28646829 ttagtttta-acattctcttttaacactcatccatttatcgaaggaaatcggcgcgggtactacactttaaaaatgagtttcaggaccaatccgatgtat 28646731  T
Q  391 atttgtaggtttaaagagtattttacattgaggcttaagtgtgttgacaaagaaacataaaaactaaggacactaaatatgtaat 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28646730 atttgtaggtttaaagagtattttacattgaggcttaagtgtgttgacaaagaaacataaaaactaaggacactaaatatgtaat 28646646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 28647140 - 28646968
Alignment:
Q  20 tatgtttcatgtgaatgtaatttgtgtgcttgaaataagatggctacaacaaaagtgcgtgctgattgctgaataattgcgctaaaaatatgtgatttga 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  28647140 tatgtttcatgtgaatgtactttgtgtgcttgaaataagatggctacaacaaaagtgtgtgatgattgctgaataattgcgctaaaaatatgtgatttga 28647041  T
Q  120 atcataccgtacttgtaatcattaaaattagaagga-gattagaaatactctcttttatccccgtgagcctag 191  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28647040 atcataccgtacttgtaatcattaaaattagaaggaggattagaaatactctcttttatccccctgagcctag 28646968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 3446800 - 3446852
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  3446800 accccacttctccacat-ttatatgtgtgaactctagccactaggctacttgac 3446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 4878279 - 4878331
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  4878279 accccacttctccacat-ttatatgtgtgagctctagccactaggctacttgac 4878331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 15939344 - 15939412
Alignment:
Q  193 gttcgaaccccgaacccccc--ttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||||||||||||| ||||  |||||||||| | | |||||||| ||| |||||||||||||| ||||    
T  15939344 gttcgaaccccgaacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctgac 15939412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 28672387 - 28672338
Alignment:
Q  89 tgaataattgcgctaaaaatatgtgatttgaatcataccgtacttgtaat 138  Q
    ||||||| |||| |||| |||||| |||||||| ||||||||||||||||    
T  28672387 tgaataaatgcgttaaatatatgttatttgaattataccgtacttgtaat 28672338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 44651982 - 44651930
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  44651982 accccacttctccacat-ttatatgtgtgaactctagccactaggctacttgac 44651930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 48515379 - 48515338
Alignment:
Q  212 cttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  48515379 cttctccacat-ttaaatgtgtgaactctagccactaggctac 48515338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 49443440 - 49443376
Alignment:
Q  191 gagttcgaaccccgaacccccc--ttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    |||||||||||||| || ||||  |||||||||| ||| |||||||| ||||||||||||||||||    
T  49443440 gagttcgaaccccggacaccccacttctccacat-ttaaatgtgtgagctctagccactaggctac 49443376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 23398941 - 23398993
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| ||||||| |||| |||||||||||||||||| ||||    
T  23398941 accccacttctccacat-ttatatgcgtgagctctagccactaggctacttgac 23398993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 5174025 - 5173963
Alignment:
Q  193 gttcgaaccccgaacccccc--ttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    ||||||||||||||| ||||  |||||||||| | || ||||||| ||||||||||||||||||    
T  5174025 gttcgaaccccgaacaccccacttctccacatttaat-tgtgtgagctctagccactaggctac 5173963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 31712619 - 31712671
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  31712619 accccacttctccacat-ttatatgtgtgagctctagccactaggctacttgac 31712671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 26823723 - 26823787
Alignment:
Q  191 gagttcgaaccccgaacccc--ccttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    |||||||||||||| || ||  |||||||||||| |||||||||||| ||| ||||||||||||||    
T  26823723 gagttcgaaccccggacaccacccttctccacat-ttatatgtgtgagctccagccactaggctac 26823787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 21548512 - 21548444
Alignment:
Q  193 gttcgaaccccgaacccccc--ttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||||||||||||| ||||  |||||||||  | | |||||||| |||||||||||||||||| ||||    
T  21548512 gttcgaaccccgaacaccccacttctccacaattaaaatgtgtgagctctagccactaggctacttgac 21548444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 38283194 - 38283241
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    ||||| ||||||||||| | || ||||||||||||||||||||||||||    
T  38283194 accccacttctccacatttaat-tgtgtgaactctagccactaggctac 38283241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 12364819 - 12364871
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  12364819 accccacttctccacat-ttatatgtgtgagctctagccactaggctacttgac 12364871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 4886908 - 4886955
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    ||||| ||||||||||||| || |||||||||||||| |||||||||||    
T  4886908 accccacttctccacatataat-tgtgtgaactctagacactaggctac 4886955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 9125738 - 9125784
Alignment:
Q  212 cttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  9125738 cttctccacat-ttatatgtgtgagctctagccactaggctacttgac 9125784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 33933739 - 33933686
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| | |||||||||| || ||||||||||||||| ||||    
T  33933739 accccacttctccacatttaatatgtgtgagctatagccactaggctacttgac 33933686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 47929314 - 47929363
Alignment:
Q  205 aaccccccttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    |||||| ||||||||||| | | |||||||| ||||||||||||||||||    
T  47929314 aaccccacttctccacatttaaaatgtgtgagctctagccactaggctac 47929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 54534896 - 54534949
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctacatgac 259  Q
    ||||| ||||||||||| | |||||||||| |||||| ||||||||||| ||||    
T  54534896 accccacttctccacatttaatatgtgtgagctctaggcactaggctacctgac 54534949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 542796 - 542764
Alignment:
Q  227 tatgtgtgaactctagccactaggctacatgac 259  Q
    |||||||||||||||||||||||||||| ||||    
T  542796 tatgtgtgaactctagccactaggctacttgac 542764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 29204715 - 29204762
Alignment:
Q  206 accccccttctccacatattatatgtgtgaactctagccactaggctac 254  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||||||    
T  29204715 accccacttctccacat-ttagttgtgtgaactctagccactaggctac 29204762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University