View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19166_high_1 (Length: 517)
Name: NF19166_high_1
Description: NF19166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19166_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Complemental strand, 41671489 - 41670994
Alignment:
| Q |
12 |
atcatcaatataaccatgataaggtggtaccaaggatttgatactgtcaataacagtcacaggcagaacctgctgcagtgtagtgatgttccacgccatt |
111 |
Q |
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| T |
41671489 |
atcatcaatataaccatgataaggtggtaccaaggatttgatactgtcaataacagtcacaggcagaacctgctgcagtgtagtgattttccacgccatt |
41671390 |
T |
|
| Q |
112 |
ttgcatataccgtgccaaaattggtgagagcatacggcaaaagctgattgtaattgggatttggggaa-ccaattatcaagccaaaatctcacatttttt |
210 |
Q |
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| T |
41671389 |
ttgcatataccatgccaaaattggtgagagcatacggcaaaagctgattgtaattgggatttggggaaaccaattatcaagccaaaatctcacatttttt |
41671290 |
T |
|
| Q |
211 |
ccactaccaaccatccaaaccttgggaatcaaatcataaccacacttgtagtttgctcgaacggtgttcaaccaaactaccaaatcacttagtgcaaatt |
310 |
Q |
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| T |
41671289 |
ccactaccaaccatccaaaccttaggaatcaaatcataaccgcacttgtagtttgctcaaacgatgttcaaccaaactaccaaatcacttagtgcaaatt |
41671190 |
T |
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| Q |
311 |
tttccccacaccattgagtacatgttctctccccacataaaagcaatgccctgaaactcactcactggtctcaacttattcaaatgtgcatcctattgta |
410 |
Q |
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| T |
41671189 |
tctccccacactgttaagtacatgttctctccccgcataaaagcaatgccctgaaactcactcactggtctcaacttattcaaatgtgcatcctattgta |
41671090 |
T |
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| Q |
411 |
ttacaataaatgctttgtaaaccacagatctgaagccccaatgaacttcaagaaacttaacataatcacacatagttaaag--agacaaaataatt |
504 |
Q |
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| T |
41671089 |
ttacaagaaatgctttgtaaaccacagatctgaagccccaatgaacttcaagaaacttaacatgatcacacatatttaaagatagacaaaataatt |
41670994 |
T |
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