View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19166_low_2 (Length: 453)
Name: NF19166_low_2
Description: NF19166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19166_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 24 - 415
Target Start/End: Original strand, 4824439 - 4824830
Alignment:
| Q |
24 |
catgtttttaaacattggtgccgaagaagaggtttttgatgcgacattgctttactaaaccatcaaaacctggctgatagataggaatttgatcgttgta |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4824439 |
catgtttttaaacattggtgccgaagaagaggtttttgatgcgacattgctttactaaaccatcaaaacctggctgatagataggaatttgatcgttgta |
4824538 |
T |
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| Q |
124 |
ccatgctacaatgcacgattttgtgatatcaacgaccattacaacggttgatggaaattttaatgcaatggctgccattgttgaaccggcaacatatcca |
223 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4824539 |
ccatgctacaatgcgcgattttgtgatatcaacgaccgttacatcagttgatgtaaattttaatgcaatggctgccatcgttgaaccggcaacatatcca |
4824638 |
T |
|
| Q |
224 |
gcactaatgcaacaaatcttcaccgttttttcttttctaacctatctaggtgtttaaacaatagtcactttgaagttttagtccggaaaattgtggataa |
323 |
Q |
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| T |
4824639 |
gcactaatgcaacaaatcttcaccgttttttcttttctaacctatctaggtgtttaaacaatagtcactttgaagttttagtccggaaaattgtggataa |
4824738 |
T |
|
| Q |
324 |
aaatatcttttaacaatcatagtttgnnnnnnnactcacacacataatttcctaacaaaaaatagcttaattcatgctacggagttaattta |
415 |
Q |
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| T |
4824739 |
aaatatcttttaacaatcatagtttgtttttttactcacacacataatttcctaacaaaaaagagctcaattcatgctacggagttaattta |
4824830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 4803910 - 4804024
Alignment:
| Q |
2 |
aacacaatgtcagcttcgtagacatgtttttaaacattggtgccgaagaagaggtttttgatgcgacattgctttactaaaccatcaaaacctggctgat |
101 |
Q |
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| T |
4803910 |
aacacaatgtcagcttcatagacatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatcaatacctggctcat |
4804009 |
T |
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| Q |
102 |
agataggaatttgat |
116 |
Q |
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||||||||| ||||| |
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| T |
4804010 |
agataggaagttgat |
4804024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 4798056 - 4797943
Alignment:
| Q |
9 |
tgtcagcttcgtagacatgtttttaaacattggtgccgaagaagaggtttttgatgcgacattgctttactaaaccatcaaaacctggctgatagatagg |
108 |
Q |
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|||||||||| | ||||||||||| ||||| |||| |||||| ||||| ||| |||| |||||||||||| | |||||| |||||| | |||||| | |
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| T |
4798056 |
tgtcagcttcatggacatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctggttcatagatggc |
4797957 |
T |
|
| Q |
109 |
aatttgatcgttgt |
122 |
Q |
| |
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|| |||||| |||| |
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| T |
4797956 |
aagttgatcattgt |
4797943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 4819520 - 4819664
Alignment:
| Q |
15 |
cttcgtagacatgtttttaaacattggtgccgaagaagaggtttttgatgcgacattgctttactaaaccatcaaaacctggctgatagataggaatttg |
114 |
Q |
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|||||||||||||||||| ||| | ||| |||||| | | | ||| ||||||||||||||||| | |||||| ||| | || ||||||||||| ||| |
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| T |
4819520 |
cttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatcaagaccggactcatagataggaacttg |
4819619 |
T |
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| Q |
115 |
atcgttgtaccatgctacaatgcacgattttgtgatatcaacgac |
159 |
Q |
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| T |
4819620 |
attgttgtgccacactgcaatacgcgatttcgagatatcaacgac |
4819664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 10779302 - 10779452
Alignment:
| Q |
2 |
aacacaatgtcagcttcgtagacatgtttttaaacattggtgccgaagaagaggtttttgatgcgacattgctttactaaaccatcaaaacctggctgat |
101 |
Q |
| |
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|||||||| | |||||| ||||||||||||| ||||| |||| |||||| ||| | ||| ||||||||| |||||||| | ||||| | | ||| || |
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| T |
10779302 |
aacacaattttagcttcatagacatgtttttcaacatcagtgctgaagaaaagg-tcttgctgcgacattactttactacataatcaagattttgctcat |
10779400 |
T |
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| Q |
102 |
agataggaatttgatcgttgtaccatgctacaatgcacgattttgtgatatc |
153 |
Q |
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||||||||| ||||| ||||| ||| || |||||| |||||| | |||||| |
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| T |
10779401 |
agataggaagttgattgttgttccacactgcaatgcgcgatttcgagatatc |
10779452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 19327355 - 19327414
Alignment:
| Q |
197 |
gccattgttgaaccggcaacatatccagcactaatgcaacaaatcttcaccgttttttct |
256 |
Q |
| |
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| T |
19327355 |
gccattgttggaccaccaacatagccagctccaatgcaacaaatcttcaccattttttct |
19327414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 3665212 - 3665277
Alignment:
| Q |
187 |
tgcaatggctgccattgttgaaccggcaacatatccagcactaatgcaacaaatcttcaccgtttt |
252 |
Q |
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||||||| |||||||||||| ||| | |||||||| |||| |||||| |||||||||||| |||| |
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| T |
3665212 |
tgcaatgactgccattgttggaccaccgacatatccggcaccaatgcagcaaatcttcaccatttt |
3665277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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