View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19167_high_1 (Length: 642)
Name: NF19167_high_1
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 180 - 556
Target Start/End: Original strand, 37316241 - 37316617
Alignment:
| Q |
180 |
atgttcttttaggggttatgttatgttattgacacgtatgcatgtggaagttattgtcaacctagaccctacatgtgtgataattacattatgnnnnnnn |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316241 |
atgttcttttaggggttatgttatgttattgacacgtatgcatgtggaagttattgtcaacctagaccctacatgtgtgataattacattatgttttttt |
37316340 |
T |
|
| Q |
280 |
cttttgagagaaataattacattatgctaaaacataaacatcagacgtatccacccattttggcatcacatcatagttatctggacttttctgaactcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37316341 |
tttttgagagaaataattacattatgctaaaacacaaacataagacgtatccacccattttggcatcacatcatagttatctggacttttctgaacttat |
37316440 |
T |
|
| Q |
380 |
tgatacataaaatttccatcaaattacatttttcgttatcatcgaaaatgttaaattggaacttaataattttcatcaaggcacattacaactgccatat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316441 |
tgatacataaaatttccatcaaattacatttttcgttatcatcgaaaatgttaaattggaacttaataattttcatcaaggcacattacaactgccatat |
37316540 |
T |
|
| Q |
480 |
tttgtcatattttcgtcatataattaaatcattacacaattgttgtctgtttatctgtcttaacatgcttgtcttac |
556 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316541 |
tttgtcatatttttgtcatataattaaatcattacacacttgttgtctgtttatctgtcttaacatgcttgtcttac |
37316617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 37312855 - 37313028
Alignment:
| Q |
6 |
agagagaagaataatgtagttcaaacatctttcaagagaggagattataatttacactaataaatattatattagattttgaaaattctcgccataaagt |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37312855 |
agagagaagaataatgtagttcaaacaactttcaagagaggagattataatttacactaataaatattatattagattttgaaaattctcgccataaagt |
37312954 |
T |
|
| Q |
106 |
tttgacgaaaaatccttgtatccataggcaaactaagaaagtaaccaaaattatatacttatgttttgttttgta |
180 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37312955 |
tttgacgaaaaatccttgtatccttaggcaaactaagaaagtaaccaaaattatat-cttatgttttgttttgta |
37313028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University