View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19167_high_17 (Length: 324)

Name: NF19167_high_17
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19167_high_17
NF19167_high_17
[»] chr3 (6 HSPs)
chr3 (18-162)||(14174504-14174648)
chr3 (18-130)||(951896-952008)
chr3 (217-313)||(951724-951820)
chr3 (232-313)||(14174274-14174355)
chr3 (161-216)||(14174405-14174458)
chr3 (266-304)||(14174358-14174396)
[»] scaffold0007 (3 HSPs)
scaffold0007 (30-162)||(258428-258560)
scaffold0007 (217-313)||(258692-258788)
scaffold0007 (175-216)||(258618-258659)
[»] chr7 (3 HSPs)
chr7 (30-162)||(40723473-40723606)
chr7 (217-308)||(40723738-40723829)
chr7 (161-216)||(40723652-40723705)
[»] chr2 (1 HSPs)
chr2 (98-153)||(2193526-2193581)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 14174648 - 14174504
Alignment:
Q  18 gattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  14174648 gattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatctatttctataactatgctgaaaaacattttg 14174549  T
Q  118 aatattacttttcttcattcaaatgggaatcctttatatcttttg 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14174548 aatattacttttcttcattcaaatgggaatcctttatatcttttg 14174504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 952008 - 951896
Alignment:
Q  18 gattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttg 117  Q
    |||||||||||||||||| |||  | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  952008 gattaattttgaacttaaatctaataaaaaacattatactttgtggaaggtgttatttctctttcaatttgtttctataactatgctgaaaaacattttg 951909  T
Q  118 aatattacttttc 130  Q
    |||||||||||||    
T  951908 aatattacttttc 951896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 951820 - 951724
Alignment:
Q  217 gtttaaaaattattgtaatcaccatggatctcttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatggagaata 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  951820 gtttaaaaattattgtaatcaccatggatctcttttgacgttttaaccaatcagatgatagtgtgaatgaatctttcttacgcacttatggaaaata 951724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 14174355 - 14174274
Alignment:
Q  232 taatcaccatggatctcttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatggagaata 313  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14174355 taatcaccatggaccttttttgacgttttaactaatcagatgatagtgtgaatgaatctttcttacgcacttatggaaaata 14174274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 14174458 - 14174405
Alignment:
Q  161 tgagagataaattattatccccaaattttgaagttgattatctaaaatctaaatgt 216  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  14174458 tgagagataaatt--tatccccaaattttgaagttgattatctaaaatctaaatgt 14174405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 14174396 - 14174358
Alignment:
Q  266 atcagatgatagtgtgaatgaatctttcttacccactta 304  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14174396 atcagatgatagtgtgaatgaatctttcttacgcactta 14174358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 258428 - 258560
Alignment:
Q  30 acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatattactttt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  258428 acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatctgtttttataactatgctgaaaaacattttgaatattactttt 258527  T
Q  130 cttcattcaaatgggaatcctttatatcttttg 162  Q
    |||||||||||||||||||||||||||||||||    
T  258528 cttcattcaaatgggaatcctttatatcttttg 258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 258692 - 258788
Alignment:
Q  217 gtttaaaaattattgtaatcaccatggatctcttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatggagaata 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  258692 gtttaaaaattattgtaatcaccatggatctcttttgacgttttaactaatcaaatgatagtgtgaatgaatctttcttacacacttatggaaaata 258788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 258618 - 258659
Alignment:
Q  175 ttatccccaaattttgaagttgattatctaaaatctaaatgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  258618 ttatccccaaattttgaagttgattatctaaaatctaaatgt 258659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 40723473 - 40723606
Alignment:
Q  30 acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaa--acattttgaatattactt 127  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  40723473 acttaagtctgttaaaaaacattatactttgtggaag-tgttatttctctttcaatctgtttctataactatgctgaaaaaaacattttgaatattactt 40723571  T
Q  128 ttcttcattcaaatgggaatcctttatatcttttg 162  Q
    ||||||||| |||||| ||||||||||||||||||    
T  40723572 ttcttcattaaaatggaaatcctttatatcttttg 40723606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 40723738 - 40723829
Alignment:
Q  217 gtttaaaaattattgtaatcaccatggatctcttttgacgtattaactaatcagatgatagtgtgaatgaatctttcttacccacttatgga 308  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  40723738 gtttaaaaatgattgtaatcaccatggatctcttttgacgttttaactaatcaaatgatagtgtgaatgaatctttcttacgcacttatgga 40723829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 40723652 - 40723705
Alignment:
Q  161 tgagagataaattattatccccaaattttgaagttgattatctaaaatctaaatgt 216  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  40723652 tgagagataaatt--tatccccatattttgaagttgattatctaaaatctaaatgt 40723705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 2193581 - 2193526
Alignment:
Q  98 ctatgctgaaaaacattttgaatattacttttcttcattcaaatgggaatccttta 153  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||  ||||||||||    
T  2193581 ctatgcagaaaaacattttgaattctacttctcttcattcaaatatgaatccttta 2193526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University