View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19167_high_18 (Length: 302)
Name: NF19167_high_18
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 44409654 - 44409922
Alignment:
| Q |
19 |
ctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409654 |
ctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggc |
44409753 |
T |
|
| Q |
119 |
atcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409754 |
atcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaa |
44409853 |
T |
|
| Q |
219 |
ttgcttagtgttcgttatcccaacaaccatacctaagtagtatatatgctgcaaatcaaaatgctaccttcat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44409854 |
ttgcttagtgttcgttatcccaacaaccatacctaagtag----tatgctgcaaatcaaaatgctaccttcat |
44409922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
185 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
226 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University