View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19167_high_2 (Length: 595)
Name: NF19167_high_2
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Original strand, 50484788 - 50485359
Alignment:
| Q |
17 |
catttaagaggacaggtgttgcttcttgtactacatagtttcatgcaatgcagccacgacatgcaatgcttcttcacctcttgccaagtaatctgtcacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50484788 |
catttaagaggacaggtgttgcttcttgtactacatagtttcatgcaatgcagccacgacatgcaatgcttcttcacctcttgccaagtaatctgtcacc |
50484887 |
T |
|
| Q |
117 |
ggttccccttataataatgctatataccaacgcttctttttcacacaaacaactctaccatcaactctcaacactaaaaactcaatcctcaatcataann |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50484888 |
ggttccccttataataatgctatataccaacgcttctttttcacacaaacaactctaccatcaactctcaacactaaaaactcaatcctcaatcataatt |
50484987 |
T |
|
| Q |
217 |
nnnnnnncttgtgaatttgtcttgccacaatgactgatcaaggaagaacaggatcctactcatcatatggaggatcctacggaggatcaccctatgacac |
316 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50484988 |
tttttttcttgtgaatttgtcttgccaccatgactgatcaaggaagaacaggatcctactcatcatatggaggatcctacggaggatcaccctatgacac |
50485087 |
T |
|
| Q |
317 |
caacatcaacaacaacaaccaaccctcacgccaaacagtgaagttcataacagctgcaactattggtgtgacactgttgttcttgtctggactaatcctt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50485088 |
caacatcaacaacaacaaccaaccctcacgccaaacagtgaagttcataacagctgcaactattggtgtgacactgttgttcttgtctggactaatcctt |
50485187 |
T |
|
| Q |
417 |
gttggtactgtcataggattaatcattgcaacccctctacttgttatcttcagtcctatcctagttccagctgctatagtcctatcactcattgctggtg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50485188 |
gttggtactgtcataggattaatcattgcaacccctctacttgttatcttcagtcctatcctagttccagctgctatagtcctatcactcattgctggtg |
50485287 |
T |
|
| Q |
517 |
gctttatgttctctggtggttgtggtgtagctgctatagctgcattgtcatggatatacaactatgtctctg |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50485288 |
gctttatgttctctggtggttgtggtgtagctgctatagctgcattgtcatggatatacaactatgtctctg |
50485359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University