View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19167_high_3 (Length: 593)
Name: NF19167_high_3
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 107 - 577
Target Start/End: Original strand, 4387972 - 4388435
Alignment:
| Q |
107 |
tgcttctgtaaagaacttgttcctcggcttactatgttttgctttctccatgattcaacaaattgtttgattggagtcacaaaggaaggcagagcgacac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4387972 |
tgcttctgtaaagaacttgttcctcggcttactatgttttgctttctccatgattaaacaaattgtttgattggagtcacaaaggaaggcagagcgacac |
4388071 |
T |
|
| Q |
207 |
aaatcaacacaatcattgatgagatgataggatcaacaaaagaggcacccataaaacacaaagaagtgtttggtgggcggaagaattttaannnnnnnnn |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388072 |
aaatcaacacaatcattgatgagatgataggatcaacaaa-gaggcacccataacacacaaagaagtgtttggtgggcggaagaattttaatttttttt- |
4388169 |
T |
|
| Q |
307 |
gtgtgttaagcttccggttcctaggggaagggggctcctagtaattaagaagttctaccgaaagttaagtaaagcttagcaaagaattgttcccaccaga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388170 |
-tgtgttaagcttccggttcctaggggaagggggctcctagtaattaggaagttctaccgaaagttaagtaaagcttagcaaagaattgttcccaccaga |
4388268 |
T |
|
| Q |
407 |
attcgaacttgtgctttgtttatcgataataatcatccaagcttatgtcacataaatcttacgaaaatacttacatgcatctcaaggaaaaaacaataaa |
506 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4388269 |
attcggacttgtgctttgtttatcgataataatcatccaagcttatgtcacataaatcttacgaaaatactta----catctcaaggaaaaaacaataaa |
4388364 |
T |
|
| Q |
507 |
gcaagtgtcactgtttcggtttactcttcatgggatctatgacttggcaaaggaagctataaggagattgg |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388365 |
gcaagtgtcactgtttcggtttactcttcatgggatctatgacttggcaaaggaagctataaggagattgg |
4388435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University