View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_high_4 (Length: 542)
Name: NF19167_high_4
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 304 - 535
Target Start/End: Original strand, 3899969 - 3900200
Alignment:
| Q |
304 |
tgggcttcttggaaaatagtagagaaataatcacggatataatgttgaattatatattctcttacacatatatgttttcaatgttgaattaattaagcaa |
403 |
Q |
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|||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899969 |
tgggcttcttggaagacagtagagaaataatcacggacataatgttgaattatatattctcttacacatatatgttttcaatgttgaattaattaagcaa |
3900068 |
T |
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| Q |
404 |
agttttgagttttgatgagtctaatagatcttttccctgcaggctcgatttgtacatgatccttgtgtgtttctgtcgtttgtaaaattagtgataatgt |
503 |
Q |
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| T |
3900069 |
agttttgagttttgatgagtctaatagatcttttccctgcaggctcgatttgcacatgatccttgtgtgtttctgtcgtttgtaaaattagtgataatgt |
3900168 |
T |
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| Q |
504 |
atttaaaaagggaaaatactcttgatgatgtc |
535 |
Q |
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| T |
3900169 |
atttaaaaagggaaaatactcttgatgatgtc |
3900200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 535
Target Start/End: Original strand, 3886374 - 3886899
Alignment:
| Q |
16 |
agaaatatggtgaagatcttgatagtttccgaacgataacctttaggagtcaaaacaatgtgagtatcgttgaaatggaaagggaaagcacctgaattca |
115 |
Q |
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| T |
3886374 |
agaaatatggtgaaggtcttgatagtttccagatgatcacctttaggagtcaaaacaatgtgagcatcgttgagatgggaagggaaagcacctgaattca |
3886473 |
T |
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| Q |
116 |
actaggagggcgcagactcaaacaattcatctttt---agatcaccccaaaaatgctgatagaaactcgaattaagaccgtcggaacctagagacttgtt |
212 |
Q |
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| T |
3886474 |
actatgaggatgcggagtcgaacaattaatcctctcctagatcaccccgaaaatgctgattgaaaatcgaattaagaccgtcgggactcagagatttgtc |
3886573 |
T |
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| Q |
213 |
gggatgtatactaaaaattgcctccttcaattcatccttttaaaaacgtcttc-aagaagcatattatcatcattagacacacaaggctggatgggctt- |
310 |
Q |
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| T |
3886574 |
gtgatgtatacttaaaattgcctccttaaattcatcctttgataaaggtcttgtaagaagcatattatcatcatttgacacgcaaggctggatgggcgtg |
3886673 |
T |
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| Q |
311 |
----cttg--gaaaatagtagagaaataatcacggatataatgttgaattatatattctcttacacatatatgttttcaatgttgaattaattaagcaaa |
404 |
Q |
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| || | |||||||||||||||||||||| |||||||||| | | || | | ||||| |||||||||||||||||||||||||| |
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| T |
3886674 |
ataacatgctgctgatagtagagaaataatcacggacataatgttgataaaggtcttgtaagaagcatat----tttcaatgttgaattaattaagcaaa |
3886769 |
T |
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| Q |
405 |
gttttgagttttgatgagtctaatagatcttttccctgcaggctcgatttgtacatgatccttgtgtgtttctgtcgtttgtaaaattagtgataatgta |
504 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||| || |||||||||||| |||| ||||||| |
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| T |
3886770 |
-ttttgagttttgatgagtctaatagatcttttccatgcaggctcgatttgtacacgctcctcgtgtgtatcagtcgtttgtaaacacagtgctaatgta |
3886868 |
T |
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| Q |
505 |
tttaaaaagggaaaatactcttgatgatgtc |
535 |
Q |
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| |||| || ||||| ||||||||||||||| |
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| T |
3886869 |
tataaacagagaaaacactcttgatgatgtc |
3886899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 3899841 - 3899944
Alignment:
| Q |
205 |
gacttgttgggatgtatactaaaaattgcctccttcaattcatccttttaaaaacgtcttcaagaagcatattatcatcattagacacacaaggctggat |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
3899841 |
gacttgttgggatgtatactaaaaattgcctccttaaattcatccttttaaaaatgtcttgaagaagcatattatcatcattagacacgcaaggctggat |
3899940 |
T |
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| Q |
305 |
gggc |
308 |
Q |
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|||| |
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| T |
3899941 |
gggc |
3899944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 377 - 489
Target Start/End: Original strand, 3860214 - 3860326
Alignment:
| Q |
377 |
gttttcaatgttgaattaattaagcaaagttttgagttttgatgagtctaatagatcttttccctgcaggctcgatttgtacatgatccttgtgtgtttc |
476 |
Q |
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|||||||||||||||||||| || |||| |||| |||||||||||||||||||||| ||||||||||||| ||||||| || ||| |||| |||||||| |
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| T |
3860214 |
gttttcaatgttgaattaatcaaccaaaattttaagttttgatgagtctaatagatattttccctgcaggatcgatttctaaatgctcctcatgtgtttc |
3860313 |
T |
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| Q |
477 |
tgtcgtttgtaaa |
489 |
Q |
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|||||| |||| |
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| T |
3860314 |
catcgtttataaa |
3860326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 454
Target Start/End: Original strand, 16068114 - 16068204
Alignment:
| Q |
367 |
acacatatatgttttcaatgttgaattaatta---agcaaagttttgagttttgatgagtctaatagatcttttccctgcaggctcgattt |
454 |
Q |
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||||||||||||||||||||| |||||||| | | ||| |||| ||||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
16068114 |
acacatatatgttttcaatgtagaattaataatcaatgaaatttttcagttttgatgagtctaatagatctttttcatgcagactcgattt |
16068204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 454
Target Start/End: Original strand, 16071437 - 16071517
Alignment:
| Q |
374 |
tatgttttcaatgttgaattaattaagcaaagttttgagttttgatgagtctaatagatcttttccctgcaggctcgattt |
454 |
Q |
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|||||||||||||| |||||||| | ||| ||| |||||||| ||||||||||||| |||| | ||||| |||||||| |
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| T |
16071437 |
tatgttttcaatgtagaattaatcgatgaaatatttcagttttgacgagtctaatagatgtttttcatgcagactcgattt |
16071517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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