View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_high_8 (Length: 458)
Name: NF19167_high_8
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 31997905 - 31998334
Alignment:
| Q |
10 |
aagaatatgcctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttca |
109 |
Q |
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| T |
31997905 |
aagaaaatgcctcgtggacgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttct |
31998004 |
T |
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| Q |
110 |
tggtaacagttggtttgtttatctttctggctctgcataagaattggattttaannnnnnnaatcaaagtcttttgacctatttcactctggagtaatta |
209 |
Q |
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| T |
31998005 |
tggtcacagttggtttgtttatctttctggctctgcataagaattggattttaatttttttaatcgaagtcttttgacctatttcactctggagtaatta |
31998104 |
T |
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| Q |
210 |
gtttcttacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaa |
309 |
Q |
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| T |
31998105 |
gtttcttacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaa |
31998204 |
T |
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| Q |
310 |
tgatattgtattcaacaaaggtcagatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagc |
409 |
Q |
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| T |
31998205 |
tgatgttgtattcaacaaaggtcagatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagc |
31998304 |
T |
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| Q |
410 |
aagagtatatcagatcacgttcgagtgaat |
439 |
Q |
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| T |
31998305 |
aagagtatatctgatcacgttcgagtgaat |
31998334 |
T |
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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 15843026 - 15843120
Alignment:
| Q |
7 |
tcgaagaatatgcctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgct |
101 |
Q |
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|||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| ||||||| |||| ||||| |
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| T |
15843026 |
tcgaagaaaatacctcgtggatgtggacttgcatagtaggagatggtcttgttggagggggcaatgtgcctctggagggaagtacattacctgct |
15843120 |
T |
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