View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_10 (Length: 426)
Name: NF19167_low_10
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 54115376 - 54115789
Alignment:
| Q |
1 |
ccgagactaatgtttataattggttccagaacagaagagctcgttcaaagcgcaagcaatcatcagttcctgcaggaaatcatgcagagccagaggcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115376 |
ccgagactaatgtttataattggttccagaacagaagagcacgttcaaagcgcaagcaatcatcagttcctgcaggaaatcatgcagagccagaggcaga |
54115475 |
T |
|
| Q |
101 |
cacagaagttgagtctccaaaagagaacaaaacatgtgaagaaagcgatcaagttcagttctttgagagtttatcacctcatcgggtcaaggatatgtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115476 |
cacagaagttgagtctccaaaagagaacaaaacatgtgaagaaagcgatcaagttcagttctttgagagtttatcacctcatcgggtcaaggatatgtac |
54115575 |
T |
|
| Q |
201 |
cttcagagtcctgacataggtattaatcttaacttctatgaatactcactaactaggtaattcccttttgtattaaactagtttttgagaacatgtacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115576 |
cttcagagtcctgacataggtattaatcttaacttctatgaatactcactaactaggtaattcccttttgtattaaactagtttttgagaacatgtacat |
54115675 |
T |
|
| Q |
301 |
tgcacatgaagaaatctgtgtaaggaatcaatgttcgatacgattgacaattctctgtgttcagttaggggaagttaataaatgatataattatcttaag |
400 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115676 |
tgcacatgaagaaatctgtgtaaggaatccatgttcgatacgattgacaattctctgtgttcagttaggggaagttaataaatgatataattatcttaag |
54115775 |
T |
|
| Q |
401 |
tgctcatgtctcat |
414 |
Q |
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|||||||||||||| |
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| T |
54115776 |
tgctcatgtctcat |
54115789 |
T |
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