View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_11 (Length: 413)
Name: NF19167_low_11
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 241 - 406
Target Start/End: Complemental strand, 3308106 - 3307935
Alignment:
| Q |
241 |
ctgatacttgctaacttcaatcaactctttcatgaatcatgtaacaagattatttatacagcattggaaaattaaggtcacaagaccaattagcttgt-- |
338 |
Q |
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| T |
3308106 |
ctgatacttgctaacttcaatcaactctttcatgaatcatgtaacaagattatttatacagcattggaaaattaagatcacaagaccaattagcttgtta |
3308007 |
T |
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| Q |
339 |
-----tatgttatttgtatcatgctcaattttgacagtttcctatacattgtccatgtgtacagattgaggtt |
406 |
Q |
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| T |
3308006 |
ttatatatgttatttgtatcgtgctcaattttgacagtttcctgta-tttgtccacgtgtacagattcaggtt |
3307935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 3308328 - 3308196
Alignment:
| Q |
18 |
aatgtttgcatctttattgatttcaagtaaaaaagagtaaatttatgctttaatgcatgcataactatcctaagaaaaagtttatgttgattgtgcattt |
117 |
Q |
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| T |
3308328 |
aatgtttgcatctttattgacttcaagtgaaaaaaaataaatccattttttaatgcatgcacaactatcctatgaaaa-gtttatgttgattgtgcattt |
3308230 |
T |
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| Q |
118 |
gtaacatccctcttcatataatagttgaacgaaa |
151 |
Q |
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| T |
3308229 |
gtaacatccctcttcatataatagttgaatgaaa |
3308196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 3296918 - 3296809
Alignment:
| Q |
265 |
ctctttcatgaatcatgtaacaagattatttatacagcattggaaaattaaggtcacaagaccaattagcttgttatgttatttgtatcatgctcaattt |
364 |
Q |
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| T |
3296918 |
ctcttttataaatcatgtaaccaaattatttatttagcattggaaaattaaggtcacaagaccaattaggttgttatgttatttgtatcatgctcaatat |
3296819 |
T |
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| Q |
365 |
tgacagtttc |
374 |
Q |
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|||||||||| |
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| T |
3296818 |
tgacagtttc |
3296809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 241 - 374
Target Start/End: Original strand, 3216322 - 3216452
Alignment:
| Q |
241 |
ctgatacttgctaa-cttcaatcaactctttcatgaatcatgtaacaagattatttatacagcattggaaaattaaggtcacaagaccaattagcttgtt |
339 |
Q |
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|||||||||||||| ||||||||| |||||| || ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
3216322 |
ctgatacttgctaaacttcaatcagctcttttataaatcatgtatcaagattgttttatcagcattggaaaattaaggtcacaagaccaatta----gtt |
3216417 |
T |
|
| Q |
340 |
atgttatttgtatcatgctcaattttgacagtttc |
374 |
Q |
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| T |
3216418 |
atgttatttgtatcatgctcaatattgacagtttc |
3216452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 3301606 - 3301509
Alignment:
| Q |
53 |
agtaaatttatgctttaatgcatgcataactatcctaagaaaaagtttatgttgattgtgcatttgtaacatccctcttcatataatagttgaacgaaa |
151 |
Q |
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| T |
3301606 |
agtacatttatgctttgatgcatgcacaactatcctaa-aaaaagtttaagttgattgtgtatttgtagcatccctcttcatataatagttgaatgaaa |
3301509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 374
Target Start/End: Original strand, 3203537 - 3203670
Alignment:
| Q |
242 |
tgatacttgctaacttcaatcaactctttcatgaa-tcatgtaacaagattatttatacagcattggaaaattaaggtcacaagaccaattagcttgtta |
340 |
Q |
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|||||||||||||||||||| | ||||||| || |||||||||| ||| ||||| |||||||| ||| ||||| |||| |||||| |||| |||||| |
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| T |
3203537 |
tgatacttgctaacttcaattcgccctttcataaaatcatgtaacagtattgtttattcagcattgaaaatttaagttcacgagaccatttagtttgtta |
3203636 |
T |
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| Q |
341 |
tgttatttgtatcatgctcaattttgacagtttc |
374 |
Q |
| |
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||| ||||||||||||||||||||||| |||||| |
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| T |
3203637 |
tgtcatttgtatcatgctcaattttgatagtttc |
3203670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 410
Target Start/End: Complemental strand, 3301449 - 3301266
Alignment:
| Q |
241 |
ctgatacttgctaacttcaatcaactctttcatgaatcatgtaacaagattatttatacagcattggaaaattaaggtcacaagaccaa----------- |
329 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||||| |||||||||| | ||||||| || |
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| T |
3301449 |
ctgatacttgctaacttcaatcagctctttcataaatcatgtaagaagattatttatttagcatttgaaaattaagtttacaagactaaattaagcaact |
3301350 |
T |
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| Q |
330 |
----ttagcttgttatgttatttgtatcatgctcaattttgacagtttcctatacattgtccatgtgtacagattgaggttctct |
410 |
Q |
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||| | ||||||| ||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| ||||||||| |
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| T |
3301349 |
aattttatcccgttatgtaatttgtatcatcctcaattttgacagtttcctgta-tttgtccacgtgtacagattcaggttctct |
3301266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 3216029 - 3216127
Alignment:
| Q |
52 |
gagtaaatttatgctttaatgcatgcataactatcctaagaaaaagtttatgttgattgtgcatttgtaacatccctcttcatataatagttgaacgaaa |
151 |
Q |
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||||||||||||||||| ||||||||| |||||||||| ||||||||| ||| ||| || || |||||||||||||| ||||| ||||||||| |||| |
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| T |
3216029 |
gagtaaatttatgctttgatgcatgcactgctatcctaag-aaaagtttaagttcattctgtatatgtaacatccctctgcatatgatagttgaatgaaa |
3216127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 3195893 - 3195840
Alignment:
| Q |
299 |
cagcattggaaaattaaggtcacaagaccaattagcttgttatgttatttgtat |
352 |
Q |
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| T |
3195893 |
cagcattgaaaaattaaggtcacaagactgattttcttgttaagttatttgtat |
3195840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 3203377 - 3203409
Alignment:
| Q |
17 |
aaatgtttgcatctttattgatttcaagtaaaa |
49 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
3203377 |
aaatgtttgcatctttcttgatttcaagtaaaa |
3203409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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