View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_15 (Length: 354)
Name: NF19167_low_15
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 111 - 339
Target Start/End: Complemental strand, 44805697 - 44805469
Alignment:
| Q |
111 |
cactgcctctattcaagtcatttctcctgttaaagccatagagtcgcccaaaaaggaaactagccaaaagaaaaattttggaaccaagttgaaagaaaat |
210 |
Q |
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| T |
44805697 |
cactgcctctagtcaagtcacttctcctgttaaaaccatagagtcacccaaaaaggaaactagccaaaagaaaatttttggaaccaagttgaaagaaaat |
44805598 |
T |
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| Q |
211 |
ctcagaatgaactctgcaatttcaaaatctgcttctggtagtttgaaccgtagtaggtcagttaaaaagtcagataagtcaagcaagcttgaaaccaaaa |
310 |
Q |
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| T |
44805597 |
ctcagaatgaactctgcaatttcaaaatctgcttctggtagtttgaaccgtagtaggtcagttaaaaagtcagataagtcaagcaagcttgaaaccaaaa |
44805498 |
T |
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| Q |
311 |
agagtggggtcaagaaatatggaaggaaa |
339 |
Q |
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| T |
44805497 |
agagtggggtcaagaaatatggaaggaaa |
44805469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 44805875 - 44805700
Alignment:
| Q |
11 |
cacagatgccagaagaggaaactcgttcgtctgatgatgaaggcaacttcagcacttcttctaccatggttactggtaaactgacccccaagtgcttaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44805875 |
cacagatgccagaagaggaaactcgttcgtctgatgatgaaggcaacttcagcacttcttctaccatggttactggtaaactgacccccaagtgcttaaa |
44805776 |
T |
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| Q |
111 |
cactgcctctattcaagtcatttctcctgttaaagccatagagtcgcccaaaaaggaaactagccaaaagaaaaat |
186 |
Q |
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| T |
44805775 |
cactgcctctattcaagtcacttctcctgttaaagccatagagtcgcccaaaaaggaaactagccaaaagaaaaat |
44805700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 21011336 - 21011240
Alignment:
| Q |
243 |
ttctggtagtttgaaccgtagtaggtcagttaaaaagtcagataagtcaagcaagcttgaaaccaaaaagagtggggtcaagaaatatggaaggaaa |
339 |
Q |
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||||| ||||||||||||||||||||| || |||||||||| |||| | |||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
21011336 |
ttctgatagtttgaaccgtagtaggtctgtcaaaaagtcaggtaagctaggcaagcttgaaaccaataagagtggactcaagaaatatggaaggaaa |
21011240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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