View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_16 (Length: 348)
Name: NF19167_low_16
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 25342562 - 25342875
Alignment:
| Q |
18 |
cacggtgcatgcattcaccacataaaataaatgcacatgttgttcaattgttttggagtaagggatgttaatggttttcattggatttacactgaacctg |
117 |
Q |
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| T |
25342562 |
cacggtgcatgcattcaccacataaaataaatgcacatgttgttcaattgttttggagtaagggatgttaatggttttcattggatttacactgaacctg |
25342661 |
T |
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| Q |
118 |
tttttagtgtgtgtagtttcttagccgacaattatacggactaaagaaagggacttccataaccaaaatcgtttcagaaaagtggagtcatatatgtact |
217 |
Q |
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| T |
25342662 |
tttttagtgtgtgtagtttcttagccgacagtaatacggactaaagaaagggacttccataaccagaatcattttagaaaggtggagtcatatatgtact |
25342761 |
T |
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| Q |
218 |
tctatcacattttagaaaatacttaaaaacactgttattggattaatccaagtgataagagtccccgtgatcttatttcagttgatatagacattaatgt |
317 |
Q |
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| T |
25342762 |
tctatcacattttagaaaatacttaaaaacactgttaatggattaatccaagtgataagagtccacctgagcttagctcagttgatatggacattaatgc |
25342861 |
T |
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| Q |
318 |
ataatatatgcaag |
331 |
Q |
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| T |
25342862 |
ataatatatgcaag |
25342875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 16580866 - 16580811
Alignment:
| Q |
278 |
gtccccgtgatcttatttcagttgatatagacattaatgtataatatatgcaaggtctg |
336 |
Q |
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| T |
16580866 |
gtccccgtgagcttaattcagttggtatggaca---atgtataatatatgcaaggtctg |
16580811 |
T |
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