View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_19 (Length: 285)
Name: NF19167_low_19
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 9423586 - 9423327
Alignment:
| Q |
1 |
aatcaaagcttgaacaatgttacttctatggttcaatcttcaatgcagatgtgtaacccttatggcgttgatcctagctcaatgcagtggtgccatatgc |
100 |
Q |
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| T |
9423586 |
aatcaaagcttgaacaatgttacttccatggttcaatcttcaatgcagatgtgtcacccttatggcgttgatcctagctcaatgcagtggtgccatatgc |
9423487 |
T |
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| Q |
101 |
cgaacatttttagaccgaacattggcttgcaatttgttcctgaatcatttaggaacggatcagtttcaataggttcaaataattgtatttcgccttcttc |
200 |
Q |
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| T |
9423486 |
cgaacatt---------------ggcttgcaatttgttcctgaatcatttaagaacggatcagtttcaataggttcaaataattgtatttcgccttcttc |
9423402 |
T |
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| Q |
201 |
atctactactagctagtaatagttgtcgctccggtaatagatcattgatccttggaaaacacaccacaggttctg |
275 |
Q |
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| T |
9423401 |
atctactactagctagtaatagttgtcgctccggtaataaatcactgatccttggaaaacacaccagagattctg |
9423327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 9430884 - 9430673
Alignment:
| Q |
1 |
aatcaaagcttgaacaatgttacttctatggttcaatcttcaatgcagatgtgtaacccttatggcgttgatcctagctcaatgcagtggtgccatatgc |
100 |
Q |
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|||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| || || |
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| T |
9430884 |
aatcaaagatggaacaatgttacttctatggttcaatcatcaatgcagatgtgtaacccttatggcattgatcctactgcaatgcagtggtgtcacgcgc |
9430785 |
T |
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| Q |
101 |
cgaacatttttagaccgaacattggcttgcaatttgttcctgaatcatttaggaacggatcagtttcaataggttcaaataattgtatttcgccttcttc |
200 |
Q |
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| T |
9430784 |
cgatggtggctgttacaaacattggcttgcaatttgttcctggatcaaacaggaatggaaatgtgtccataggttcaaatggttgcatttcaccttcttc |
9430685 |
T |
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| Q |
201 |
atctactactag |
212 |
Q |
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| T |
9430684 |
atctactactag |
9430673 |
T |
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