View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_23 (Length: 257)
Name: NF19167_low_23
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 45666862 - 45667047
Alignment:
| Q |
1 |
cccttttttgctgtaaaaaagttatagtgatactaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatcatgtgtttatcgcaag |
100 |
Q |
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| T |
45666862 |
cccttttttgctgtaaaaaagttatagtgatactaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatcatgtgtttatcgcaag |
45666961 |
T |
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| Q |
101 |
aaaacacggcatggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
186 |
Q |
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| T |
45666962 |
aaaacacggcgtggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
45667047 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 38257767 - 38257829
Alignment:
| Q |
124 |
atacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
186 |
Q |
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|||||||||||| | |||||||||||||||||| | || ||||||||||||||||| ||||| |
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| T |
38257767 |
atacatggaaaatcaaataccattcacaggaatattgagcaataaacctgaagaaaacccagg |
38257829 |
T |
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