View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_26 (Length: 237)
Name: NF19167_low_26
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 45666557 - 45666779
Alignment:
| Q |
17 |
gtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtattt |
116 |
Q |
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| T |
45666557 |
gtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtattt |
45666656 |
T |
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| Q |
117 |
ctacaccaaataatagtattaaggttgacgagtctttcttttcttttcgt---acttcaatagcannnnnnngtgaatttgttggctgattcccattttt |
213 |
Q |
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| T |
45666657 |
ctacaccaaataatagtattaaggttgacgagtctttcttttcttttcgtcgtactttaatagcatttttttgtgaattttttggctgattccca-tttt |
45666755 |
T |
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| Q |
214 |
tgcaacatacatatatgccatggc |
237 |
Q |
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| T |
45666756 |
tgtaacatgcatatatgccatggc |
45666779 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 37973780 - 37973690
Alignment:
| Q |
24 |
gcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtat |
114 |
Q |
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| T |
37973780 |
gcagtctgcttggatggaacattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggtat |
37973690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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