View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_5 (Length: 541)
Name: NF19167_low_5
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 531
Target Start/End: Original strand, 50484788 - 50485302
Alignment:
| Q |
17 |
catttaagaggacaggtgttgcttcttgtactacatagtttcatgcaatgcagccacgacatgcaatgcttcttcacctcttgccaagtaatctgtcacc |
116 |
Q |
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| T |
50484788 |
catttaagaggacaggtgttgcttcttgtactacatagtttcatgcaatgcagccacgacatgcaatgcttcttcacctcttgccaagtaatctgtcacc |
50484887 |
T |
|
| Q |
117 |
ggttccccttataataatgctatataccaacgcttctttttcacacaaacaactctaccatcaactctcaacactaaaaactcaatcctcaatcataann |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484888 |
ggttccccttataataatgctatataccaacgcttctttttcacacaaacaactctaccatcaactctcaacactaaaaactcaatcctcaatcataatt |
50484987 |
T |
|
| Q |
217 |
nnnnnnncttgtgaatttgtcttgccacaatgactgatcaaggaagaacaggatcctactcatcatatggaggatcctacggaggatcaccctatgacac |
316 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484988 |
tttttttcttgtgaatttgtcttgccaccatgactgatcaaggaagaacaggatcctactcatcatatggaggatcctacggaggatcaccctatgacac |
50485087 |
T |
|
| Q |
317 |
caacatcaacaacaacaaccaaccctcacgccaaacagtgaagttcataacagctgcaactattggtgtgacactgttgttcttgtctggactaatcctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50485088 |
caacatcaacaacaacaaccaaccctcacgccaaacagtgaagttcataacagctgcaactattggtgtgacactgttgttcttgtctggactaatcctt |
50485187 |
T |
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| Q |
417 |
gttggtactgtcataggattaatcattgcaacccctctacttgttatcttcagtcctatcctagttccagctgctatagtcctatcactcattgctggtg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50485188 |
gttggtactgtcataggattaatcattgcaacccctctacttgttatcttcagtcctatcctagttccagctgctatagtcctatcactcattgctggtg |
50485287 |
T |
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| Q |
517 |
gctttatgttctctg |
531 |
Q |
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||||||||||||||| |
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| T |
50485288 |
gctttatgttctctg |
50485302 |
T |
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