View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19167_low_6 (Length: 537)

Name: NF19167_low_6
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19167_low_6
NF19167_low_6
[»] chr6 (22 HSPs)
chr6 (17-521)||(21967736-21968240)
chr6 (56-521)||(22001560-22002025)
chr6 (17-521)||(22085619-22086124)
chr6 (244-521)||(21967290-21967567)
chr6 (154-345)||(18995400-18995591)
chr6 (154-334)||(20235747-20235927)
chr6 (154-334)||(22129731-22129911)
chr6 (154-345)||(18979336-18979527)
chr6 (154-345)||(20083632-20083823)
chr6 (153-323)||(22207071-22207241)
chr6 (159-323)||(18990710-18990874)
chr6 (157-281)||(20233467-20233591)
chr6 (157-281)||(22127451-22127575)
chr6 (175-334)||(24387200-24387359)
chr6 (458-521)||(18995143-18995206)
chr6 (458-517)||(22209619-22209678)
chr6 (459-517)||(20235472-20235530)
chr6 (459-517)||(22129456-22129514)
chr6 (458-521)||(18979201-18979264)
chr6 (458-521)||(20083497-20083560)
chr6 (17-92)||(20235992-20236067)
chr6 (17-92)||(22129976-22130051)
[»] scaffold0074 (2 HSPs)
scaffold0074 (154-345)||(49868-50059)
scaffold0074 (458-521)||(50253-50316)
[»] scaffold0007 (2 HSPs)
scaffold0007 (154-345)||(7402-7593)
scaffold0007 (458-520)||(7787-7849)
[»] chr8 (3 HSPs)
chr8 (157-281)||(10401401-10401525)
chr8 (153-224)||(11225256-11225327)
chr8 (153-227)||(4159642-4159716)
[»] chr1 (9 HSPs)
chr1 (151-242)||(47619488-47619579)
chr1 (154-243)||(47584565-47584654)
chr1 (153-224)||(47743701-47743772)
chr1 (153-224)||(47758102-47758173)
chr1 (153-227)||(47627662-47627736)
chr1 (152-230)||(47593635-47593713)
chr1 (154-227)||(47711221-47711294)
chr1 (154-230)||(47698603-47698679)
chr1 (172-224)||(47700942-47700994)
[»] scaffold0264 (1 HSPs)
scaffold0264 (458-521)||(14978-15041)
[»] chr5 (3 HSPs)
chr5 (154-227)||(469773-469846)
chr5 (16-75)||(9102855-9102914)
chr5 (153-227)||(453816-453890)
[»] chr7 (4 HSPs)
chr7 (153-227)||(19939303-19939377)
chr7 (153-227)||(19970442-19970516)
chr7 (153-245)||(20285111-20285203)
chr7 (153-245)||(20294828-20294920)
[»] chr2 (1 HSPs)
chr2 (160-227)||(2672718-2672785)
[»] chr3 (1 HSPs)
chr3 (352-385)||(18403978-18404011)


Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 521
Target Start/End: Complemental strand, 21968240 - 21967736
Alignment:
Q  17 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaat 116  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21968240 tcaagaggaaggaagtacaaatagaattgttggaacatagtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaat 21968141  T
Q  117 tcaagttaaattaacatcaaatttcannnnnnngtacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttat 216  Q
    ||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21968140 tcaagttaaattaacgtcaaatttcatttttttgtacagtggttatatgtctccagaatatgcaatgttttgacaattttctgaaaaatcagatgtttat 21968041  T
Q  217 agttttggagtcatgatcctagagattgtagctggaaagaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21968040 agttttggagtcatgatcctagagattgtagctggaaagaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtg 21967941  T
Q  317 taatgatatagcaatagtatcttttcattacttcttagttgaaataatctttgatcagactttacatacttttcgatccaattttggatttaaagctcgt 416  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| ||    
T  21967940 taattatatagcaatagtatcttttcattacttcttagttgaaataatttttgatcaaactttacatacttttcgatccaattttagatttaaagctggt 21967841  T
Q  417 tttccctaataatctcatagcttagaccaaatggtatatattttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatat 516  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  21967840 tttgcctaataatctcatagcttagaccaaatgttatatattttcaggtgtggagacagtggatggataaaacacctttaaatatattggacccaaatat 21967741  T
Q  517 taaag 521  Q
    |||||    
T  21967740 taaag 21967736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 56 - 521
Target Start/End: Complemental strand, 22002025 - 22001560
Alignment:
Q  56 gtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaattcaagttaaattaacatcaaatttcannnnnnngtacag 155  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |       ||| ||    
T  22002025 gtaagtttcaaatgtttactactctattatctttttcaggttcttattgattacggtaaattcaagttaaattaacgtcaaatttaatttgtttgtaaag 22001926  T
Q  156 tggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaag 255  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  22001925 tggttatatgtctccagaatatgcaatgtttagacaattttctgaaaaatcagatatttatagttttggagtcatgatcatagagattgtagctggaaag 22001826  T
Q  256 aagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagtatcttttcattacttcttagt 355  Q
    |||||| |||||||||||||| |||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22001825 aagaatgtaagttcatatgaatcacaacatgttttcaataggctcttgaattctgtgagtgtaatgatatagcaatagtatcttttcattacttcttagt 22001726  T
Q  356 tgaaataatctttgatcagactttacatacttttcgatccaattttggatttaaagctcgttttccctaataatctcatagcttagaccaaatggtatat 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  22001725 tgaaataatctttgatcagactttacatacttttcgatccaattttggatttaaagctcgtttggcctaataatctcatagcttagaccaaatggtatat 22001626  T
Q  456 attttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaag 521  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  22001625 attttcaggtatggagacagtggatggataaaacacctttaaatatattggacccaaatattaaag 22001560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 521
Target Start/End: Complemental strand, 22086124 - 22085619
Alignment:
Q  17 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttca-ggttcttattgattacggtaaa 115  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||| | ||||||| | |  |||||||||||||| | ||| |    
T  22086124 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttaaatgtttactactttgttatcttatccccggttcttattgattgccgtaca 22086025  T
Q  116 ttcaagttaaattaacatcaaatttcannnnnnngtacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgttta 215  Q
    || |||||||||||||||||| |||          ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22086024 tttaagttaaattaacatcaatttttttttttttttacagtggttatatgtcgccagaatatgcaatgtttggacaattttctgaaaaatcagatgttta 22085925  T
Q  216 tagttttggagtcatgatcctagagattgtagctggaaagaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085924 tagttttggagtcatgatcctagagattgtagctggaaagaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagt 22085825  T
Q  316 gtaatgatatagcaatagtatcttttcattacttcttagttgaaataatctttgatcagactttacatacttttcgatccaattttggatttaaagctcg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||    
T  22085824 gtaatgatatagcaatagtatcttttcattacttcttagttgaaattatctttgatcagattttacatacttctcgatccaattttgtatttgaagctcg 22085725  T
Q  416 ttttccctaataatctcatagcttagaccaaatggtatatattttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaata 515  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  22085724 ttttgcctaataatctcatagcttagaccaaatggtatatattttcaggtatggagacagtggatggataaaacacctttaaatatattggacccaaata 22085625  T
Q  516 ttaaag 521  Q
    ||||||    
T  22085624 ttaaag 22085619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 244 - 521
Target Start/End: Complemental strand, 21967567 - 21967290
Alignment:
Q  244 gtagctggaaagaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagtatcttttca 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21967567 gtagctggaaagaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaattatatagcaatagtatcttttca 21967468  T
Q  344 ttacttcttagttgaaataatctttgatcagactttacatacttttcgatccaattttggatttaaagctcgttttccctaataatctcatagcttagac 443  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  21967467 ttacttcttagttgaaataatttttgatcaaactttacatacttttcgatccaattttagatttaaagctggttttgcctaataatctcatagcttagac 21967368  T
Q  444 caaatggtatatattttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaag 521  Q
    |||||| ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  21967367 caaatgttatatattttcaggtgtggagacagtggatggataaaacacctttaaatatattggacccaaatattaaag 21967290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 154 - 345
Target Start/End: Complemental strand, 18995591 - 18995400
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 253  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  18995591 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 18995492  T
Q  254 agaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagtatcttttcatt 345  Q
    ||||||||| |||| ||| |   ||||| ||||||||| ||  ||||||||||  ||||||||||||||| ||||| ||||||| |||||||    
T  18995491 agaagaataaaagtccatttactccacaccatgttgcttatgacctcttgaatcatgtgagtgtaatgatctagcattagtatcctttcatt 18995400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 154 - 334
Target Start/End: Complemental strand, 20235927 - 20235747
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 253  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  20235927 agtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 20235828  T
Q  254 agaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagt 334  Q
    ||||||||| |||||||| |   ||||| ||||||||| ||  ||||||||||| ||||||||||||||| || |||||||    
T  20235827 agaagaataaaagttcatttactccacaccatgttgcttatgacctcttgaattatgtgagtgtaatgatctaacaatagt 20235747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 154 - 334
Target Start/End: Complemental strand, 22129911 - 22129731
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 253  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  22129911 agtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 22129812  T
Q  254 agaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagt 334  Q
    ||||||||| |||||||| |   ||||| ||||||||| ||  ||||||||||| ||||||||||||||| || |||||||    
T  22129811 agaagaataaaagttcatttactccacaccatgttgcttatgacctcttgaattatgtgagtgtaatgatctaacaatagt 22129731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 154 - 345
Target Start/End: Complemental strand, 18979527 - 18979336
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 253  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||  | |||||||||||||| ||| |  |||||||| | |||||||    
T  18979527 agtggttatatgtctccggaatatgtaatgtttggacaattttctgaaaaatccgacatatatagttttggagttatgcttgtagagattattgctggaa 18979428  T
Q  254 agaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagtatcttttcatt 345  Q
    ||||||||| |||||| | |   ||||| ||||||||| || |||||||||||  |||||||| |||||| ||||| ||||||| |||||||    
T  18979427 agaagaataaaagttcgtttactccacatcatgttgctgatggcctcttgaatcatgtgagtgcaatgatctagcagtagtatcctttcatt 18979336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 154 - 345
Target Start/End: Complemental strand, 20083823 - 20083632
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 253  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  20083823 agtggttatatgtctccggaatatgtaatgttcggacaattttctgaaaaatccgacatttatagttttggagttatgcttatagagattattgctggaa 20083724  T
Q  254 agaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagtatcttttcatt 345  Q
    ||||||||| |||||| | |   ||||| ||||||||| || |||||||||||  |||||||| |||||| ||||| ||||||| |||||||    
T  20083723 agaagaataaaagttcgtttactccacatcatgttgctgatggcctcttgaatcatgtgagtgcaatgatctagcagtagtatcctttcatt 20083632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 22207071 - 22207241
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctgga 252  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | | ||||    
T  22207071 cagtggttatatgtctccagaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgttgga 22207170  T
Q  253 aagaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgat 323  Q
    |||||||| | |||||||| |   ||||| ||||||||| ||  ||||||||||  ||||||||| |||||    
T  22207171 aagaagaacaaaagttcatttactccacaccatgttgcttatgacctcttgaatcatgtgagtgttatgat 22207241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 159 - 323
Target Start/End: Complemental strand, 18990874 - 18990710
Alignment:
Q  159 ttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaagaag 258  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| || ||  |||||||||||||||| ||| |  |||||||| | |||| |||||||    
T  18990874 ttatatgtctccggaatatgtaatgtttggacaattttctgaaaattccgacatttatagttttggagttatgcttttagagattattgctgaaaagaag 18990775  T
Q  259 aatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgat 323  Q
    |||| |||||| | |   ||||| ||||||||| || ||||||| |||  |||||||| ||||||    
T  18990774 aataaaagttcgtttactccacatcatgttgctgatggcctcttaaatcatgtgagtgcaatgat 18990710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 20233467 - 20233591
Alignment:
Q  157 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaaga 256  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| ||||| |||||||||||||||||||||||| |  |||| ||| |  | |||||||    
T  20233467 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaaga 20233566  T
Q  257 agaatataagttcatatgaaccaca 281  Q
    ||||||| || || |||||| ||||    
T  20233567 agaatattaggtcttatgaatcaca 20233591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 22127451 - 22127575
Alignment:
Q  157 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaaga 256  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| ||||| |||||||||||||||||||||||| |  |||| ||| |  | |||||||    
T  22127451 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaaga 22127550  T
Q  257 agaatataagttcatatgaaccaca 281  Q
    ||||||| || || |||||| ||||    
T  22127551 agaatattaggtcttatgaatcaca 22127575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 24387200 - 24387359
Alignment:
Q  175 tatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaagaagaatataagttcatatg 274  Q
    |||| ||||||||||||||||||||||||||| ||  ||||||||||||||||  || |  | |||||| | |||||||||||||||| |||||| | |     
T  24387200 tatgtaatgtttggacaattttctgaaaaatccgacatttatagttttggagttctgcttttcgagattattgctggaaagaagaataaaagttcgttta 24387299  T
Q  275 aaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagt 334  Q
      ||||| ||||||||| || |||| ||||||  |||||||| |||||| ||||| ||||    
T  24387300 ctccacatcatgttgctgatggccttttgaatcatgtgagtgcaatgatctagcagtagt 24387359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 18995206 - 18995143
Alignment:
Q  458 tttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaag 521  Q
    ||||||||||||||||||||||||||| |  ||||| ||| ||| ||||||| |||||||||||    
T  18995206 tttcaggtatggagacagtggatggatcaaacacctataagtattttggacctaaatattaaag 18995143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 22209619 - 22209678
Alignment:
Q  458 tttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatatt 517  Q
    ||||||||||||||||| ||||||||| |  ||||||||| ||| |||||||||||||||    
T  22209619 tttcaggtatggagacaatggatggatcaaacacctttaagtattttggacccaaatatt 22209678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 20235530 - 20235472
Alignment:
Q  459 ttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatatt 517  Q
    |||||||||||||||| ||||||||| |  ||||||||| ||| |||||||||||||||    
T  20235530 ttcaggtatggagacaatggatggatcaaacacctttaagtattttggacccaaatatt 20235472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 22129514 - 22129456
Alignment:
Q  459 ttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatatt 517  Q
    |||||||||||||||| ||||||||| |  ||||||||| ||| |||||||||||||||    
T  22129514 ttcaggtatggagacaatggatggatcaaacacctttaagtattttggacccaaatatt 22129456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 18979264 - 18979201
Alignment:
Q  458 tttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaag 521  Q
    |||||||||||||||| |||||||||  |  ||||||||| |||| |||| |||||||||||||    
T  18979264 tttcaggtatggagacggtggatggaggaaacacctttaagtatactggatccaaatattaaag 18979201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 20083560 - 20083497
Alignment:
Q  458 tttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaag 521  Q
    |||||||||||||||| |||||||||  |  ||||||||| |||| |||| |||||||||||||    
T  20083560 tttcaggtatggagactgtggatggagcaaacacctttaagtatactggatccaaatattaaag 20083497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 20236067 - 20235992
Alignment:
Q  17 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttc 92  Q
    |||||| || |||||||||||| || |||||||||||| ||||||||  |||||| ||  |||| |||||||||||    
T  20236067 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgttgacccctctgttatctttttc 20235992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 22130051 - 22129976
Alignment:
Q  17 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttc 92  Q
    |||||| || |||||||||||| || |||||||||||| ||||||||  |||||| ||  |||| |||||||||||    
T  22130051 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgttgacccctctgttatctttttc 22129976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 154 - 345
Target Start/End: Original strand, 49868 - 50059
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 253  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  49868 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 49967  T
Q  254 agaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagtatcttttcatt 345  Q
    ||||||||| |||| ||| |   ||||| ||||||||| ||  ||||||||||  ||||||||||||||| ||||| ||||||| |||||||    
T  49968 agaagaataaaagtccatttactccacaccatgttgcttatgacctcttgaatcatgtgagtgtaatgatctagcattagtatcctttcatt 50059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 50253 - 50316
Alignment:
Q  458 tttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaag 521  Q
    ||||||||||||||||||||||||||| |  ||||| ||| ||| |||||||||||||||||||    
T  50253 tttcaggtatggagacagtggatggatcaaacacctataagtattttggacccaaatattaaag 50316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 154 - 345
Target Start/End: Original strand, 7402 - 7593
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 253  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  7402 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatctgacatttatagttttggagttatgcttttagagattattgctggaa 7501  T
Q  254 agaagaatataagttcatatgaaccacaacatgttgctaatagcctcttgaattctgtgagtgtaatgatatagcaatagtatcttttcatt 345  Q
    ||||||||| |||| ||| |   ||||| ||||||||| ||  ||||||||||  ||||||||||||||| ||||| ||||||| |||||||    
T  7502 agaagaataaaagtccatttactccacaccatgttgcttatgacctcttgaatcatgtgagtgtaatgatctagcagtagtatcctttcatt 7593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 7787 - 7849
Alignment:
Q  458 tttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaa 520  Q
    ||||||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||    
T  7787 tttcaggtatggagacagtggatggatcaaacacctttaagtatattggacccaaatattaaa 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 10401525 - 10401401
Alignment:
Q  157 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaaga 256  Q
    |||||||| |||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||  | || ||| |  |||||||||    
T  10401525 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaaga 10401426  T
Q  257 agaatataagttcatatgaaccaca 281  Q
    |||| ||||| || |||||| ||||    
T  10401425 agaacataaggtcttatgaatcaca 10401401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 11225256 - 11225327
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 224  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  11225256 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttgg 11225327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 4159716 - 4159642
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    ||||||||||||| | || ||||||||||||   ||||  |||||||| ||||||||||||||||| ||||||||    
T  4159716 cagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagt 4159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 47619488 - 47619579
Alignment:
Q  151 tacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagat 242  Q
    |||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||| |||| |||||||||||| |||||| |||||||    
T  47619488 tacagtggttatatgtctcctgaatatgcaatgcttggaaaattctctgaaaaatcagacgtttttagttttggagtaatgatcatagagat 47619579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 47584565 - 47584654
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagatt 243  Q
    ||||||||||| |||||||||||||| |||  |||| | |||||||  ||||||||||| |||||||||||| ||||| | |||||||||    
T  47584565 agtggttatatatctccagaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagatt 47584654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 47743772 - 47743701
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 224  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  47743772 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttgg 47743701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 47758173 - 47758102
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 224  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  47758173 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttgg 47758102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 47627662 - 47627736
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    ||||||||| |||||||| ||||||||||||  |||||||||||| || || || ||||||| ||||||||||||    
T  47627662 cagtggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagt 47627736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 47593635 - 47593713
Alignment:
Q  152 acagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcat 230  Q
    |||| ||||| ||||| ||||||||||||||| ||||||| ||||| || || || ||||||| ||||||||| |||||    
T  47593635 acaggggttacatgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcat 47593713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 47711294 - 47711221
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    ||||| |||||| |||| || |||| || ||||||| ||||||| | |||||||||||||| ||||||||||||    
T  47711294 agtggatatatggctcccgagtatgtaaggtttggagaattttcggtaaaatcagatgtttttagttttggagt 47711221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 47698603 - 47698679
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcat 230  Q
    ||||| ||||||||||  ||||||||||||  ||||||| |||| |||||||| || ||||  ||||||||||||||    
T  47698603 agtggctatatgtctcaggaatatgcaatgcatggacaactttcagaaaaatcggacgttttcagttttggagtcat 47698679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 47700994 - 47700942
Alignment:
Q  172 gaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 224  Q
    |||||||||||||||||||||||||| |  ||||| ||||||| |||||||||    
T  47700994 gaatatgcaatgtttggacaattttcagtcaaatcggatgtttttagttttgg 47700942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 15041 - 14978
Alignment:
Q  458 tttcaggtatggagacagtggatggataaggcacctttaaatatattggacccaaatattaaag 521  Q
    ||||||||||||||||| ||||||||| |  ||||||||| |||||||||||||||||||||||    
T  15041 tttcaggtatggagacaatggatggatcaaacacctttaagtatattggacccaaatattaaag 14978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 469846 - 469773
Alignment:
Q  154 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||| ||||| ||||| |  |||||||||||    
T  469846 agtggttatatgtctccggaatatgcaatgcacggacaattttctgagaaatccgatgtgttcagttttggagt 469773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 9102855 - 9102914
Alignment:
Q  16 atcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcact 75  Q
    ||||||| ||||||||||||||| || |||||||| ||||||||||||  ||||||||||    
T  9102855 atcaagacgaaggaagtacaaatagaattgttggagcatagtaagttttgaatgttcact 9102914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 453890 - 453816
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    |||||||||||||||| | ||||||||||||  |||||| | ||| |||||||||||||| | ||| ||||||||    
T  453890 cagtggttatatgtcttccgaatatgcaatgcatggacattattcagaaaaatcagatgtgtttagctttggagt 453816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 19939303 - 19939377
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    |||||||||||||||||||||||||||||||   ||||  |||||||| ||||| ||||| | ||| ||||||||    
T  19939303 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagt 19939377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 19970442 - 19970516
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    |||||||||||||||||||||||||||||||   ||||  |||||||| ||||| ||||| | ||| ||||||||    
T  19970442 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagt 19970516  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 20285111 - 20285203
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgt 245  Q
    |||||| ||||||||||| ||||||||||||   |||  |||||| || ||||||||| ||| ||||||||| ||  |||| |||||||||||    
T  20285111 cagtggctatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgttttgatactagagattgt 20285203  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 20294828 - 20294920
Alignment:
Q  153 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgt 245  Q
    |||||| ||||||||||| ||||||||||||   |||  |||||| || ||||||||||||| ||| ||||| ||  |||| |||||||||||    
T  20294828 cagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgt 20294920  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 2672718 - 2672785
Alignment:
Q  160 tatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 227  Q
    ||||||||||||||||||||||||  |||| | |||||||  ||||| |||||||  |||||||||||    
T  2672718 tatatgtctccagaatatgcaatgggtggatatttttctgcgaaatctgatgttttcagttttggagt 2672785  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 18403978 - 18404011
Alignment:
Q  352 tagttgaaataatctttgatcagactttacatac 385  Q
    ||||||||||||||||||| ||||||||||||||    
T  18403978 tagttgaaataatctttgaccagactttacatac 18404011  T

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