View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19167_low_9 (Length: 436)
Name: NF19167_low_9
Description: NF19167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19167_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 55479321 - 55478915
Alignment:
| Q |
18 |
gtatcctattaactcttctccatcttaagccaagttgtagagtgtacatttcatattaaatgattgatttgttttgttttactgagtaattttcattgca |
117 |
Q |
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| T |
55479321 |
gtatcctattaactcttctccatcttaagccaagttgtagagtctacatttcatattaaatgattgatttgttttgttttactgagtaattttcattgca |
55479222 |
T |
|
| Q |
118 |
tgtataaa--ctacatatgtaacttgaattcaaaattaccactgatatctgaataaaatgatcttcatgtaatcatggtagaaatatcgagatcaagaat |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55479221 |
tgtataaattctacatatgtaacttgaattcaaaattaccactgatatctgaataaaatgatcttcatgtaatcatggtagaaatatcgagatcaagaat |
55479122 |
T |
|
| Q |
216 |
attctcataaaggtaagttataaacttgtactatttgccagcctcactagttgtttatggtgaagaacatgtaatcaagtctcaagagtaaaatttcaag |
315 |
Q |
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| T |
55479121 |
attctcataaaggtaagttataaacttgtactatttgccagcctcactagttgtttatggtgaagaacatgtaatcaagtctcaagagtaaaatttcaag |
55479022 |
T |
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| Q |
316 |
tgaaattattaaagagatcgcacatatcatgacatgagtagtaataataggaataataataagtcaggactctaaagttgggtattgggatttccatttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55479021 |
tgaaattattaaagagatcgcacatatcatgacatgagtagtaataat---aagaataataagtcaggactctaaagttgggtattgggatttccatttt |
55478925 |
T |
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| Q |
416 |
tcctttgtcc |
425 |
Q |
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| T |
55478924 |
tcctttgtcc |
55478915 |
T |
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