View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_high_15 (Length: 374)
Name: NF19168_high_15
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 303
Target Start/End: Complemental strand, 9690961 - 9690669
Alignment:
| Q |
22 |
ggcaccagtggtcagagagctagcgcta---------ccagaagctggtgttcgggcgccagtatgtgtg-gaagcgctgtttcaatgctgatgagtcta |
111 |
Q |
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| T |
9690961 |
ggcaccagtggtcagagagctagcgctagtttcagcaccagaagttggtgttcgggcgccagtatgtgtgtgaagcgctgtttcaatgcagatgagtcta |
9690862 |
T |
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| Q |
112 |
gagttgattcttagacttgagtataagttctagggtttattttaggtaaaattaaatgatagagtattcatagatcgtaataaacaagagatcagtgtag |
211 |
Q |
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| T |
9690861 |
aagttgattcctagacttgagtataagttctagggtttattttaggtaaaattaaatgatatagtattcatagatcgtaataaacaagagatcagtgtag |
9690762 |
T |
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| Q |
212 |
agtttaattgtgagacaattatcctctaaagtagaggagcagtgtaattcagcagttacaatgt-aggtaggtgagtagggcggcacttacga |
303 |
Q |
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| T |
9690761 |
agtttaattgtgaggcagttatcctctaaactagaggagcagtgtaattcaacaattacaatgtaaggtaggtgagtagggcggcacttacga |
9690669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 9689991 - 9689943
Alignment:
| Q |
309 |
tttatctaagaaacttccttcaaaaatgtttatctaagaaagtcaattg |
357 |
Q |
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| T |
9689991 |
tttatctaagaaacttccttcaaatatgtttatctaagaaagtaaattg |
9689943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 1933851 - 1933979
Alignment:
| Q |
54 |
aagctggtgttcgggcgccagtatgtgtg-gaagcgctgtttcaatgctgatgagtctagagttgattcttagacttgagtataagttctagggtttatt |
152 |
Q |
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| T |
1933851 |
aagcttgtgttccggcgccaatatgtgtctgaagcgttgtttcagggc--atgagtctaaaattgattcttaaacttgagtataagctcttgggtttatt |
1933948 |
T |
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| Q |
153 |
ttaggtaaaattaaatgatagagtattcatag |
184 |
Q |
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| T |
1933949 |
ttgggt-aaataaaatgatatattattcatag |
1933979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 1945136 - 1945233
Alignment:
| Q |
176 |
tattcatagatcgtaataaacaagagatcagtgtagagtttaattgtgagacaattatcctctaaagtagaggagcagtgtaattcagcagttacaatgt |
275 |
Q |
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| T |
1945136 |
tattcatagttcataacaaacaagaaatcaatgtagagcttaattgggg--cagttatcctctaaagtagaggagcaatgtaattaagtagttacaatgt |
1945233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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