View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_high_19 (Length: 307)
Name: NF19168_high_19
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 34583229 - 34582943
Alignment:
| Q |
1 |
atctaagcttcaatctttaaaagtcacatattccatggtgggtttaaaacacattcat----ggtgttcactgcaccccatttattataacaattaagct |
96 |
Q |
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| T |
34583229 |
atctaagctcaaatctttaaaagtcacatattccatggtgggtttaaaacacattcattcatggtgttcattgcaccccatttat-ataacaattaagct |
34583131 |
T |
|
| Q |
97 |
aagaggttatcacgccaaaattaactatgcttacaagtcaaatcctcatatcaccatagacactatgcttacacagagaggccactgttttggagtggac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
34583130 |
aagaggttatcacgccaaaattaactatgcttacaagtcaactcctcatatcaccatagacactatgcttacatagagaggccactgtttcggagtggac |
34583031 |
T |
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| Q |
197 |
tttaggacgtctcaatacaacatctttcttcctgtgtaagcatcacataatcatctatcaatgtatatactattctaaacctctcacc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34583030 |
tttaggacgtctcaatacaacatctttcttcctgtgtaagcatcacataatcatctatcaatgtatatactattctaaacctctcacc |
34582943 |
T |
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