View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_high_20 (Length: 304)
Name: NF19168_high_20
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 30289329 - 30289630
Alignment:
| Q |
1 |
agtaattgattgtagatttgatcttgacttttatggatgnnnnnnnnn-tcaatttggagaataagatttcattttgtgttaaa--tttgaaactgaggt |
97 |
Q |
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|||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
30289329 |
agtaattggtcgtagatttgatcttgacttttatggatgaaaaaaaaaatcaatttggagaa-aagatttcattttgtgttaaaagtttgaaactgaggt |
30289427 |
T |
|
| Q |
98 |
tggtcattaataaaggacgatggaattttcaatctataacacagtaacaaaaaacatgttagaacatgataatatcatcatcatgttagaagagtaatat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289428 |
tggtcattaataaaggacgatggaattttcaatctataacacagtaacaaaaaacatgttagaacatgataatatcatcatcatgttagaagagtaatat |
30289527 |
T |
|
| Q |
198 |
gtttcaaaagattacataaacaatgtaaacaaataacaagggaatgggtagcccccgttttctatacattcttcttcaagagcacatcagacttcatctc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| || |
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| T |
30289528 |
gtttcaaaagattacataaacaatgtaaacaaataacaagggaatgagtagcccccgttttctatacatccttcttcaagagcacatcaaacttcatttc |
30289627 |
T |
|
| Q |
298 |
tct |
300 |
Q |
| |
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||| |
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|
| T |
30289628 |
tct |
30289630 |
T |
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