View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_high_22 (Length: 289)
Name: NF19168_high_22
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_high_22 |
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| [»] scaffold0886 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 28 - 288
Target Start/End: Complemental strand, 44818512 - 44818240
Alignment:
| Q |
28 |
aaaatatgtgaactttgcaccaataatatggtcaaaagaaa------------ttattacttaataaaaagtgacaatttatattatatattccttaacc |
115 |
Q |
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| T |
44818512 |
aaaatatgtgaactttgcaccaataatatggttaaaagaaaggagttatgtaattattacttaataaaaagtgacaatttatattatatattccttaacc |
44818413 |
T |
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| Q |
116 |
agtgtccctaaaagaaattattgtaatcttcttacttttcaccaaagcatcaaactgtcaaacaagtggaaaagataagctcaacttgggtttgagtaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44818412 |
agtgtccctaaaagaaattattgtaatcttcttacttttcaccaaagcatcaaactgtcaaacaagtggaaaagataagctcaacttgggtttgagtaaa |
44818313 |
T |
|
| Q |
216 |
caatgttttccagatcaaactgcttatcaaattggtaacgtctcgggattatgttttaattgttttaaatcac |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44818312 |
caatgttttccagatcaaactgcttatcaaattggtaacgtctcgggattatgttttaattgttttaaatcac |
44818240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 20821935 - 20821968
Alignment:
| Q |
67 |
aattattacttaataaaaagtgacaatttatatt |
100 |
Q |
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| T |
20821935 |
aattattacttaataaaaagtgacaatttatatt |
20821968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 44041393 - 44041359
Alignment:
| Q |
67 |
aattattacttaataaaaagtgacaatttatatta |
101 |
Q |
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| T |
44041393 |
aattattacttaataaaaagtgacagtttatatta |
44041359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 44291298 - 44291265
Alignment:
| Q |
67 |
aattattacttaataaaaagtgacaatttatatt |
100 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
44291298 |
aattattacttaataaaaagtgacagtttatatt |
44291265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 49419120 - 49419087
Alignment:
| Q |
67 |
aattattacttaataaaaagtgacaatttatatt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
49419120 |
aattattagttaataaaaagtgacaatttatatt |
49419087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0886 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0886
Description:
Target: scaffold0886; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 1173 - 1140
Alignment:
| Q |
67 |
aattattacttaataaaaagtgacaatttatatt |
100 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
1173 |
aattattacttaataaaaagtgacagtttatatt |
1140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 21809874 - 21809841
Alignment:
| Q |
67 |
aattattacttaataaaaagtgacaatttatatt |
100 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
21809874 |
aattattacttgataaaaagtgacaatttatatt |
21809841 |
T |
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