View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19168_high_3 (Length: 653)
Name: NF19168_high_3
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_high_3 |
 | |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 39182260 - 39181732
Alignment:
| Q |
19 |
gtgcctactagttcagcatttaggggggtttacatgtgacactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatgatgt |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39182260 |
gtgcctactagttcagcatttagggggatttacatgtgacactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatgatgt |
39182161 |
T |
|
| Q |
119 |
gtatatctcaccattgcttaagagacataaaatggtgctgttttgatgtttggattttatgcttagtgaatgtttctgaatttctatcttctgtcttcat |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39182160 |
gtatatctcaccattgcttaagagacttaaaatggtgctgttttgatgtttggattttatgcttagtgaatgtttctgaatttctatcttctgtcttcat |
39182061 |
T |
|
| Q |
219 |
ttggttctttttatcttgtaatatcttgtgctatgacatggccaacatgactggatgcatggtgttaatgtcatgagtcatgaccctaaaaagaacannn |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39182060 |
ttggttctttttatcttgtaatatcttgtgctatgacatggccaacatgactgg----atggtgttaatgtcatgagtcatgaccctaaaaagaac-gtt |
39181966 |
T |
|
| Q |
319 |
nnnngaaatattcttttagtttgcttaaaatttagtctacttgcaataagtaaggattagaaaacttgatttgtaaattttctacctgtgttgcttgaca |
418 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39181965 |
ttttgaaatattcttttagtttgcttaaaatttagtgtacttgcaataagtaaggattagaaaacttgatttgtaaattttctacctgtgttgcttgact |
39181866 |
T |
|
| Q |
419 |
gcaaattatagttgtgtatcaaatatcacaacgagaaagattcacgtcctgtcccaggtctctagtaatgcatgctcaatttttagatatgtaaacccaa |
518 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39181865 |
gcaaattatagttgtgtgtcaaatatcacaacgaggaagattcacgtcctgtcccaggtctctagtaatgcatgctcaatttttagatatgtaaacccaa |
39181766 |
T |
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| Q |
519 |
aaatgaaaggacatcattaagcattgacccaaat |
552 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
39181765 |
aaatgaaaggacatcattaagcattgacccaaat |
39181732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 2103437 - 2103705
Alignment:
| Q |
19 |
gtgcctactagttcagcatttaggggggtttacatgtgacactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatgatg- |
117 |
Q |
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||||||||||||| |||||||||||| | |||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2103437 |
gtgcctactagtttcgcatttagggggatgtacatgagacactccatgtcaaaggtcgaatgttgtttacaattttgtcaatttgaacatgccatgatgt |
2103536 |
T |
|
| Q |
118 |
---tgtatatctcaccattgcttaagagacataaaatggtgctgttttgatgtttggattttatgctta--------gtgaatgtttctgaatttctatc |
206 |
Q |
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|||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
2103537 |
gtatgtatatcccaccattgcttaagaggcttaaaatggtgttgttttgatgtttggattttatgcttagacgccatgtgaatgtttctgaattcttatc |
2103636 |
T |
|
| Q |
207 |
ttctgtcttcatttggttctttttatcttgtaatatcttgtgctatgacatggccaacatgactggatg |
275 |
Q |
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||||||||||||||||||||||| || | ||||||||||||||||| |||||| ||||||| |||||| |
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| T |
2103637 |
ttctgtcttcatttggttcttttcattatataatatcttgtgctatgccatggcgaacatgattggatg |
2103705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 2049367 - 2049432
Alignment:
| Q |
50 |
acatgtgacactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatga |
115 |
Q |
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||||||||||||| || ||||| |||||||||||||||||||||||| | |||||||||||||||| |
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| T |
2049367 |
acatgtgacactgaatatcaaaggtcaaatgttgtttacaattttgttattttgaacatgccatga |
2049432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 2055472 - 2055531
Alignment:
| Q |
55 |
tgacactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatga |
115 |
Q |
| |
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||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
2055472 |
tgacaatgcatgtcaaaggtcaattgttgtttacaattttgt-aatttgaacatgccatga |
2055531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 2042750 - 2042801
Alignment:
| Q |
61 |
tgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgcca |
112 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||| || ||||| |
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| T |
2042750 |
tgcatgtcaaaggtcaaatgttgtttacaatttcatcaatttgtacgtgcca |
2042801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 2059635 - 2059689
Alignment:
| Q |
58 |
cactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgcca |
112 |
Q |
| |
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|||| ||||||||| || |||||||||||||||| |||| |||||||| |||||| |
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| T |
2059635 |
cactacatgtcaaaggttaaatgttgtttacaatattgttaatttgaatatgcca |
2059689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 2099582 - 2099631
Alignment:
| Q |
62 |
gcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgcc |
111 |
Q |
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|||||||||| |||||||||||||| ||| |||| |||||||||||||| |
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| T |
2099582 |
gcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcc |
2099631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 2089273 - 2089337
Alignment:
| Q |
47 |
tttacatgtgacactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgcc |
111 |
Q |
| |
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|||| ||||||| ||||||||||| ||||||| |||||| ||| |||| |||||||||||||| |
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| T |
2089273 |
tttatatgtgaccatgcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcc |
2089337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 552 - 653
Target Start/End: Complemental strand, 282 - 181
Alignment:
| Q |
552 |
tcaatcacaaattcttcatctctcactcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcaccccctctgt |
651 |
Q |
| |
|
|||||| |||| |||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||| || |
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| T |
282 |
tcaatctcaaaatcttcatctcaccctaaatctctttcatttcctctcaccctcaatctttgaaaccctaaaaagcaatttcctttctcacaccctccgt |
183 |
T |
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| Q |
652 |
tc |
653 |
Q |
| |
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|| |
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| T |
182 |
tc |
181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 552 - 653
Target Start/End: Original strand, 84253 - 84354
Alignment:
| Q |
552 |
tcaatcacaaattcttcatctctcactcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcaccccctctgt |
651 |
Q |
| |
|
|||||| |||| |||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||| || |
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| T |
84253 |
tcaatctcaaaatcttcatctcaccctaaatctctttcatttcctctcaccctcaatctttgaaaccctaaaaagcaatttcctttctcacaccctccgt |
84352 |
T |
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| Q |
652 |
tc |
653 |
Q |
| |
|
|| |
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|
| T |
84353 |
tc |
84354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 552 - 653
Target Start/End: Complemental strand, 7206386 - 7206285
Alignment:
| Q |
552 |
tcaatcacaaattcttcatctctcactcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcaccccctctgt |
651 |
Q |
| |
|
|||||| |||| |||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||| || |
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| T |
7206386 |
tcaatctcaaaatcttcatctcaccctaaatctctttcatttcctctcaccctcaatctttgaaaccctaaaaagcaatttcctttctcacaccctccgt |
7206287 |
T |
|
| Q |
652 |
tc |
653 |
Q |
| |
|
|| |
|
|
| T |
7206286 |
tc |
7206285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 577 - 647
Target Start/End: Original strand, 48009158 - 48009228
Alignment:
| Q |
577 |
ctcaatctatttcatttcctctcaccctcaatctttgaaaccctaaaacgcaatctcctctctcaccccct |
647 |
Q |
| |
|
|||||| | ||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
48009158 |
ctcaatatctttcatttcctttcacccttaatctatgaaaccctaaaaagcaatctcctctctcacaccct |
48009228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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