View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_high_32 (Length: 246)
Name: NF19168_high_32
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_high_32 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 56469219 - 56468992
Alignment:
| Q |
19 |
gtctcatttgcttgtaattcttaaacataaggcatttacgacgaggccaaacgagaggtccttgattatgaacaagctgagggcacatgactttggaaag |
118 |
Q |
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| T |
56469219 |
gtctcatttgcttgtaattcttaaacataaggcatttacgacgaggccaaacgagaggtccttgattatgaacaagctgagggcacatgactttggaaag |
56469120 |
T |
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| Q |
119 |
ccaggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatgttgatatgcatcatattacaaacaagtcatcgt |
218 |
Q |
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| T |
56469119 |
ccgggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatgttgatatgcatcatattaccaacaagtcatcgt |
56469020 |
T |
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| Q |
219 |
atacagttgtggaaacaatgtctctagc |
246 |
Q |
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| T |
56469019 |
atacagttgtggaaacaatgtctctagc |
56468992 |
T |
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