View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19168_high_33 (Length: 240)

Name: NF19168_high_33
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19168_high_33
NF19168_high_33
[»] chr4 (5 HSPs)
chr4 (1-88)||(24406228-24406315)
chr4 (143-190)||(24406184-24406231)
chr4 (35-141)||(24420158-24420257)
chr4 (26-74)||(24471354-24471402)
chr4 (26-88)||(24475844-24475906)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 24406315 - 24406228
Alignment:
Q  1 gtattaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406315 gtattaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 24406228  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 24406231 - 24406184
Alignment:
Q  143 ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406231 ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta 24406184  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 24420257 - 24420158
Alignment:
Q  35 tttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgttgataataaataaaacagtctactctccacattgaattaagagcct 134  Q
    |||||||||||||| |||| ||||||||||||||||||||||| || ||||||||       ||||||| ||||||  ||  ||| ||||||||||||||    
T  24420257 tttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgtt-------aataaaaaagtctatgctttacagtgaattaagagcct 24420165  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 24471354 - 24471402
Alignment:
Q  26 ttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgt 74  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  24471354 ttgaaattttttcaatgaattatattcagcattgttgtggttaatttgt 24471402  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 24475906 - 24475844
Alignment:
Q  26 ttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 88  Q
    ||||||||||||||| ||||||| |||| ||||||| ||||||||||||||  ||||||||||    
T  24475906 ttgaaattttttcaaagaattatattcagcattgttctggttaatttgtatcgaagcttttgt 24475844  T

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