View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_high_5 (Length: 482)
Name: NF19168_high_5
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 39918021 - 39917790
Alignment:
| Q |
19 |
tatttgaataagggtcaaaacaatgagagaagaaaaatttccagtcaaaacacaatgagagaagaattaaaactatcaagatggaaattcaacattgaac |
118 |
Q |
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| T |
39918021 |
tatttgaataagggtcaaaacaatgagagaagaaaaatttccagtcaaaacacaatgagagaagaattaaaactatcaagatggaaattcaacattgaac |
39917922 |
T |
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| Q |
119 |
tctacccttagaaatgaacacgcagcaaattaaaatagagatagaacagtgatacaaaaacagtacccaaatttatagcccaaaatattgggtaagacct |
218 |
Q |
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| T |
39917921 |
tctacccttagaaatgaacacgcagcaaattaaaatagagatagaacagtgatacaaaaacagtacccagatttatagcccaaaatattgggtaagacct |
39917822 |
T |
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| Q |
219 |
ctattcaacagtcaaccaccatagcaattagc |
250 |
Q |
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| T |
39917821 |
ctattcaacagtcaaccaccatagcaattagc |
39917790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 305 - 458
Target Start/End: Complemental strand, 39917737 - 39917584
Alignment:
| Q |
305 |
gtttcgaaattcgatactacaactaaactgtcctttgtcgttgacgttgttaactaagtaacagttacaacaacgttaacaactcagctatgctgtgatt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39917737 |
gtttcgaaattcgatactacaactaaactgtcctttgtcgttgacgttgttaactaagtaacagttacaacaacgttaacaactcagctatgctgtgatt |
39917638 |
T |
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| Q |
405 |
ctaataattaataattaaccccaaaagataagattaagcctaaattacttctac |
458 |
Q |
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| T |
39917637 |
ctaataattaataattaaccccaaaagataagattaagcctaaattacttctac |
39917584 |
T |
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