View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19168_high_8 (Length: 416)

Name: NF19168_high_8
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19168_high_8
NF19168_high_8
[»] chr3 (6 HSPs)
chr3 (221-337)||(15540139-15540255)
chr3 (220-310)||(15539318-15539408)
chr3 (207-309)||(47007730-47007832)
chr3 (226-310)||(47007026-47007110)
chr3 (226-279)||(4523181-4523234)
chr3 (332-375)||(15539830-15539874)
[»] chr8 (1 HSPs)
chr8 (1-70)||(9689718-9689787)
[»] chr6 (1 HSPs)
chr6 (221-310)||(4275070-4275159)
[»] chr2 (2 HSPs)
chr2 (221-279)||(29308385-29308443)
chr2 (222-279)||(29307853-29307910)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 15540255 - 15540139
Alignment:
Q  221 gagtccagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaagctgacacatggcaaaaagcatatcaatggcccata-tttt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||| | ||||    
T  15540255 gagtccagatcctctccatttagagaagaaatggcaatcacaatttcc-atcataaaaagatgacacgtggcaaaaagcaaatcaatggcccagattttt 15540157  T
Q  320 tcaacttaaatcaattta 337  Q
    ||||||||||| ||||||    
T  15540156 tcaacttaaataaattta 15540139  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 15539318 - 15539408
Alignment:
Q  220 tgagtccagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaagctgacacatggcaaaaagcatatcaatggc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||  |||||| ||| |||||||||||    
T  15539318 tgagtccagatcctctccatttagagaagaaatggcaatcacaatttccaattaaaataagctgacatgtggcaagaagtatatcaatggc 15539408  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 47007832 - 47007730
Alignment:
Q  207 catatatgaatgttgagtccagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaagctgacacatggcaaaaagcatatcaa 306  Q
    ||||||||||   ||||| |||||||||||||||||| || ||||| |||||| ||||||||| |||| ||||  |||||| ||| ||||   |||||||    
T  47007832 catatatgaagtgtgagtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcattaaaacatgacacgtgggaaaattaatatcaa 47007733  T
Q  307 tgg 309  Q
    |||    
T  47007732 tgg 47007730  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 47007026 - 47007110
Alignment:
Q  226 cagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaagctgacacatggcaaaaagcatatcaatggc 310  Q
    |||||||||||||||||| || ||||| |||||| ||||||||| |||| ||||  |||||| ||| ||||   |||||||||||    
T  47007026 cagatcctctccatttagggaggaaattgcaatctcaatttccattcattaaaacatgacacgtggaaaaattaatatcaatggc 47007110  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 4523181 - 4523234
Alignment:
Q  226 cagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaa 279  Q
    ||||||||||||||||   || |||||| ||||| |||||||||||||||||||    
T  4523181 cagatcctctccattttatgaggaaatgacaatctcaatttccaatcataaaaa 4523234  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 15539874 - 15539830
Alignment:
Q  332 aatttatttagaatattaaaaacagaaaaattg-tgagatccact 375  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||    
T  15539874 aatttatttagaatatcaaaaacagaaaacttgttgagatccact 15539830  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9689787 - 9689718
Alignment:
Q  1 tagttaggataaataaaataaaaagttgtgcataagtaaatgattatttactcaggatcaaaggttaact 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  9689787 tagttaggataaataaaataaaaagttgtgcataagtaaatgattatttactctggatcaaatgttaact 9689718  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 4275070 - 4275159
Alignment:
Q  221 gagtccagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaagctgacacatggcaaaaagcatatcaatggc 310  Q
    |||| ||||||||||||||||||  |  ||||||||||| ||||||||| |||||||||  |||||| ||| ||||   |||||||||||    
T  4275070 gagtacagatcctctccatttaggtagaaaatggcaatctcaatttccattcataaaaacatgacacgtggaaaaataaatatcaatggc 4275159  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 29308443 - 29308385
Alignment:
Q  221 gagtccagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaa 279  Q
    |||| |||||||||||||||||| || ||||| |||||| ||||||| | |||||||||    
T  29308443 gagtgcagatcctctccatttagggaggaaattgcaatctcaatttctattcataaaaa 29308385  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 29307853 - 29307910
Alignment:
Q  222 agtccagatcctctccatttagagaagaaatggcaatcacaatttccaatcataaaaa 279  Q
    |||||||||||||||||||||| || ||||| |||||  ||||||| | |||||||||    
T  29307853 agtccagatcctctccatttagggaggaaattgcaatgtcaatttctattcataaaaa 29307910  T

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