View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_low_1 (Length: 736)
Name: NF19168_low_1
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 176 - 723
Target Start/End: Original strand, 3880762 - 3881309
Alignment:
| Q |
176 |
gagttgatcatgtgttgaactatgtgaaataagaactacagaataatagtataacatcttttgcttgtatttatttagctatctgcatggtttaagtaat |
275 |
Q |
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| T |
3880762 |
gagttgatcatgtgttgaactatgtgaaataagaactacagaataatagtataacatcttttgcttgtatttatttagctatctgcatggtttaagtaat |
3880861 |
T |
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| Q |
276 |
agttttatacatttgcagttaaagaggttgctgttatgttaaggctttgtaattgggaccacagttattatcagtgtattaagataccttgaagtcatat |
375 |
Q |
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| T |
3880862 |
agttttatacatttgcagtccaagaggttgctgttatgttaaggctttgtaattgggaccacagttattatcagtgtattaagataccttgaagtcatat |
3880961 |
T |
|
| Q |
376 |
cttgattttgaataaatcatgaatcgtagtaaatatttggataatattcggaaaataggtcttccgattcatgatttgaatctcgatctgaaagctaagc |
475 |
Q |
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| T |
3880962 |
cttgattttgaataaatcatgaatcgtagtaaatatttggataatattcggaaaataggtcttccgattcatgatttgaatctcgatctgaaagctaagc |
3881061 |
T |
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| Q |
476 |
aactcccttttttcatctacttctcagcttgctcttcgatctctcaatttaggaatatgcccaaaattaaacatactccgcattgaagcaacgttaatgg |
575 |
Q |
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| T |
3881062 |
aactcccttttttcatctacttctcagcttgctcttcgatctctcaatttaggaatatgcccaaaattaaacatactccgcattgaagcaacgttaatgg |
3881161 |
T |
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| Q |
576 |
tctccattgagttgaaaggatgtgacggactgtctgaagcatcccttaattgtcctctcttgacatctctggatgcttccttttgcaggtgatgctttat |
675 |
Q |
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| T |
3881162 |
tctccattgagttgaaaggatgtgacggactgtctgaagcatcccttaattgtcctctcttgacatctctggatgcttccttttgcaggtgatgctttat |
3881261 |
T |
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| Q |
676 |
ttgctagtttcttggttatcttgcttgcgtatggagtatggactgatg |
723 |
Q |
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| T |
3881262 |
ttgctagtttcttggctatcctgcttgcgtatggagtatggactgatg |
3881309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 441 - 722
Target Start/End: Original strand, 3867271 - 3867552
Alignment:
| Q |
441 |
gattcatgatttgaatctcgatctgaaagctaagcaactcccttttttcatctacttctcagcttgctcttcgatctctcaatttaggaatatgcccaaa |
540 |
Q |
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| T |
3867271 |
gattcatgatttgaatctcaatctgatagctaagcaacttccgtttttcatctacttctcaggttggtcttcgatctctcaatttaggaatatgcccaaa |
3867370 |
T |
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| Q |
541 |
attaaacatactccgcattgaagcaacgttaatggtctccattgagttgaaaggatgtgacggactgtctgaagcatcccttaattgtcctctcttgaca |
640 |
Q |
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| T |
3867371 |
attaaacatacttcgcattgaagcgatgttaatggtctcacttgagttgaaaggatgtggtggactgtctgaagcatcccttaattgtcctctcttgaca |
3867470 |
T |
|
| Q |
641 |
tctctggatgcttccttttgcaggtgatgctttatttgctagtttcttggttatcttgcttgcgtatggagtatggactgat |
722 |
Q |
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| T |
3867471 |
tcactggatgcttccttttgcaggtgacgctttatctgctagtttcttggttatcctgcttatgtatggagtatgtactgat |
3867552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 3880605 - 3880673
Alignment:
| Q |
19 |
gtgatcatttggaatatgcatcattttgccctgtaagtgacattgatttattatacaatttatacttga |
87 |
Q |
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| T |
3880605 |
gtgatcatttggaatatgcatcattttgccctgtaagtgacattgatttattatacaatttatacttga |
3880673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 176 - 359
Target Start/End: Original strand, 3866883 - 3867065
Alignment:
| Q |
176 |
gagttgatcatgtgttgaactatgtga--aataagaactacagaataatagtataacatcttttgcttgtatttatttagctatctgcatggtttaagta |
273 |
Q |
| |
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| T |
3866883 |
gagttgatcatgtgatgaaatatgcgagaaattaaaactacagaataataggttaacatcgtttgcttgtatttatttagctatctgcatggtttaagta |
3866982 |
T |
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| Q |
274 |
atagttttatacatttgcagttaaagaggttgctgttatgttaaggctttgtaa-ttgggaccacagttattatcagtgtattaaga |
359 |
Q |
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| T |
3866983 |
atagcttcatacattt-cattcctagaggt---tgttgtattagggctttgtaatttgggaccacggttattatcagcgtgttaaga |
3867065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 3866730 - 3866782
Alignment:
| Q |
19 |
gtgatcatttggaatatgcatcattttgccctgtaagtgacattgatttatta |
71 |
Q |
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| T |
3866730 |
gtgatcatttggaaaatgcatcattttgccctgtaagtgatactgatatatta |
3866782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 15201604 - 15201638
Alignment:
| Q |
421 |
attcggaaaataggtcttccgattcatgatttgaa |
455 |
Q |
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| T |
15201604 |
attcggaaaataggtcttccgattcatgatttgaa |
15201638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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