View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19168_low_10 (Length: 410)

Name: NF19168_low_10
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19168_low_10
NF19168_low_10
[»] chr1 (9 HSPs)
chr1 (11-395)||(51763441-51763821)
chr1 (185-359)||(51857801-51857975)
chr1 (187-360)||(51382125-51382298)
chr1 (197-364)||(51831599-51831766)
chr1 (210-360)||(51221899-51222049)
chr1 (187-360)||(51781990-51782163)
chr1 (263-348)||(51828959-51829045)
chr1 (267-307)||(25611760-25611800)
chr1 (229-289)||(24234114-24234174)
[»] chr6 (3 HSPs)
chr6 (200-358)||(4183704-4183862)
chr6 (200-358)||(4744543-4744701)
chr6 (110-146)||(4183620-4183656)
[»] scaffold0015 (1 HSPs)
scaffold0015 (262-354)||(41142-41234)
[»] chr3 (1 HSPs)
chr3 (263-322)||(1941330-1941389)


Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 51763441 - 51763821
Alignment:
Q  11 cacagagcatttcgtcacaagctgaaactctcctgccataggatccatattatccgtaagattaagaatgagagggtgaatgagctgcttaaaactagga 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763441 cacagagcattccgtcacaagctgaaactctcctgccataggatccat--tatccgtaagattaagaatgagagggtgaatgagctgcttaaaactagga 51763538  T
Q  111 aaggatgcggcggaactgaaaatagaggagattgaggaatcagatacacagaacttctgtgcggagtacctagcgcttaggatgacgtggtggcggtcat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51763539 aaggatgcggcggaactgaaaatagaggagattgaggaatcagatatacagaacttccgtgcggagtacctagcgcttaggatgacgtggtggcggtcat 51763638  T
Q  211 ggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagttgaaggagatg 310  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763639 ggttggaagttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagttgaaggagatg 51763738  T
Q  311 tttcacggggagccggcacagaatttctgtcacgagatcaaacggaagaggcagtggtgttagggttccggtttggcttgttcct 395  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  51763739 tttcac--ggagccggcacagaatttctgtcacgagatcaaacggaagaggcggtggtgttagggctccggtttggcttgttcct 51763821  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 185 - 359
Target Start/End: Complemental strand, 51857975 - 51857801
Alignment:
Q  185 gcttaggatgacgtggtggcggtcatggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttg 284  Q
    |||||||| || ||||||||||||  ||||||||||||  ||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||    
T  51857975 gcttaggaagaggtggtggcggtcgaggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttg 51857876  T
Q  285 cagacgcaacagagttgaaggagatgtttcacggggagccggcacagaatttctgtcacgagatcaaacggaaga 359  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  51857875 cagatgcaacggagttgaaggagatttttcacggggagctggcacagaatttctgtcacgagatcgaacgaaaga 51857801  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 187 - 360
Target Start/End: Original strand, 51382125 - 51382298
Alignment:
Q  187 ttaggatgacgtggtggcggtcatggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgca 286  Q
    ||||||||| |||  ||||||| |||||||||||||  || ||||| |||||||||| ||| |  ||||||||| |||||||| ||||||||||||||||    
T  51382125 ttaggatgaggtgccggcggtcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgca 51382224  T
Q  287 gacgcaacagagttgaaggagatgtttcacggggagccggcacagaatttctgtcacgagatcaaacggaagag 360  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||| ||||||| ||| ||||| ||||||||||    
T  51382225 gacgcaacggagttgaaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaagag 51382298  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 197 - 364
Target Start/End: Complemental strand, 51831766 - 51831599
Alignment:
Q  197 gtggtggcggtcatggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacag 296  Q
    |||||||||||   ||||||||||||  ||  ||||||||||| ||||||| |  ||||| | | |||||||||| ||||||||||||||||| |||| |    
T  51831766 gtggtggcggtggaggttggaggttgacaactgaaggtgcttcctggtgaaattggaatcttcagagataagagagttccatgacttgcagacacaacgg 51831667  T
Q  297 agttgaaggagatgtttcacggggagccggcacagaatttctgtcacgagatcaaacggaagaggcag 364  Q
    ||||||||||||  |||||| |||||||||||||| ||| ||  ||||||||||||||||||| ||||    
T  51831666 agttgaaggagaaatttcactgggagccggcacaggattactaccacgagatcaaacggaagatgcag 51831599  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 51221899 - 51222049
Alignment:
Q  210 tggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagttgaaggagat 309  Q
    |||||| ||||||  |||||||| ||||||||||  || |   |||||||| ||||||||||||||||||||||||||| ||| | |||||||| ||| |    
T  51221899 tggttgaaggttgacaagcgaagttgcttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatgaggt 51221998  T
Q  310 gtttcacggggagccggcacagaatttctgtcacgagatcaaacggaagag 360  Q
    |||||||||| ||||||||||| ||||||   |||||||  ||||||||||    
T  51221999 gtttcacgggcagccggcacaggatttcttcaacgagatggaacggaagag 51222049  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 187 - 360
Target Start/End: Complemental strand, 51782163 - 51781990
Alignment:
Q  187 ttaggatgacgtggtggcggtcatggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgca 286  Q
    ||||| ||| ||||||||| || ||||| |||||||  ||||||| ||| || || | ||||| |||||||||  |||||||||||||||||||||| ||    
T  51782163 ttagggtgaggtggtggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttaca 51782064  T
Q  287 gacgcaacagagttgaaggagatgtttcacggggagccggcacagaatttctgtcacgagatcaaacggaagag 360  Q
    ||| |  | ||||| || ||||||||||||||||||| | ||||| |||||||  || ||||| ||||||||||    
T  51782063 gacacggcggagtttaatgagatgtttcacggggagcagacacaggatttctgcaaccagatcgaacggaagag 51781990  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 51829045 - 51828959
Alignment:
Q  263 gataagagaattccatgactt-gcagacgcaacagagttgaaggagatgtttcacggggagccggcacagaatttctgtcacgagat 348  Q
    ||||||||||||||||||||| |||||| |||| |||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||    
T  51829045 gataagagaattccatgactttgcagacacaacggagttgaatgaggtgtttcacggggagcaggcacagtatttctgtcacgagat 51828959  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 25611760 - 25611800
Alignment:
Q  267 agagaattccatgacttgcagacgcaacagagttgaaggag 307  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  25611760 agagaattccatgacttgcagacgcaacagaattgaaggag 25611800  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 24234114 - 24234174
Alignment:
Q  229 gaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagac 289  Q
    ||||||| || |||||||||| || ||||| | ||||||| |||||||||||||| |||||    
T  24234114 gaaggtgttttttggtgaatttaggatcattagagataagcgaattccatgacttacagac 24234174  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 358
Target Start/End: Original strand, 4183704 - 4183862
Alignment:
Q  200 gtggcggtcatggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagt 299  Q
    ||||||||| ||||||||||| |  || |||||||| ||||||| |||||  ||||||||  |||||||||||||||| |||||||| ||||||| ||||    
T  4183704 gtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagt 4183803  T
Q  300 tgaaggagatgtttcacggggagccggcacagaatttctgtcacgagatcaaacggaag 358  Q
    |||||||| |||||||| ||||| | ||| || ||||||| ||| ||||| || |||||    
T  4183804 tgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaag 4183862  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 358
Target Start/End: Original strand, 4744543 - 4744701
Alignment:
Q  200 gtggcggtcatggttggaggttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagt 299  Q
    ||||||||| ||||||||||| |  || |||||||| ||||||| |||||  ||||||||  ||||||||||||| || |||||||| ||||||| ||||    
T  4744543 gtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaatt-caggacttgcaaacgcaacggagt 4744641  T
Q  300 tgaagga-gatgtttcacggggagccggcacagaatttctgtcacgagatcaaacggaag 358  Q
    ||||||| | |||||||| ||||| | ||| || ||||||| ||| ||||| || |||||    
T  4744642 tgaaggagggtgtttcacagggagacagcagaggatttctgccacaagatcgaatggaag 4744701  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 4183620 - 4183656
Alignment:
Q  110 aaaggatgcggcggaactgaaaatagaggagattgag 146  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4183620 aaaggatgcagcggaactgaaaatagaggagattgag 4183656  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 41142 - 41234
Alignment:
Q  262 agataagagaattccatgacttgcagacgcaacagagttgaaggagatgtttcacggggagccggcacagaatttctgtcacgagatcaaacg 354  Q
    |||| |||||||||||||||||||||||||||| || ||| |||||   |||||| ||||| || || || ||||| | ||| ||||||||||    
T  41142 agattagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatcaaacg 41234  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 1941330 - 1941389
Alignment:
Q  263 gataagagaattccatgacttgcagacgcaacagagttgaaggagatgtttcacggggag 322  Q
    ||||||||||||||| |||||||| ||||| | || |||||||||| | |||||||||||    
T  1941330 gataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggag 1941389  T

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