View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_low_12 (Length: 403)
Name: NF19168_low_12
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 48681273 - 48681476
Alignment:
| Q |
5 |
agtgagaagaatgcacatatttgatatatgcagttgattggtttacccttatagattcttttgtttcttgctagtgctacagcaagaaagaaagttggca |
104 |
Q |
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| T |
48681273 |
agtgaaaagaatgcacatatttgatatatgcagttgattggtt-acccttatagattcttttgtttcttgctagtgctacagcaagaaagaaagttggca |
48681371 |
T |
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| Q |
105 |
agttccacagtcaatttggaaaattccaaagagtcggcatacacgtgatgcaaagaatgaataaatgttgacaatagtcagaacattattccaatctaat |
204 |
Q |
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| T |
48681372 |
agttccacagtgaatttggaaaattccaaagagtcggcatacacgtgatgcaaagaatgaataaatgttgacaatagtcaggacattattctaatctaat |
48681471 |
T |
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| Q |
205 |
gaccc |
209 |
Q |
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| T |
48681472 |
gaccc |
48681476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 48681503 - 48681599
Alignment:
| Q |
202 |
aatgaccccacaatgatggctgcggctgggctttaaaatatacaacaatgatattctctaatgcaacttaattatctatctatctttcttccagatcaa |
300 |
Q |
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| T |
48681503 |
aatgaccccacaatgatggc--cggctgggctttaaaatatacaacaatgatattctctaatgcaacttaattatctatctatctttcttccagatcaa |
48681599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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