View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19168_low_13 (Length: 398)

Name: NF19168_low_13
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19168_low_13
NF19168_low_13
[»] chr6 (4 HSPs)
chr6 (1-348)||(2427980-2428320)
chr6 (72-133)||(24766035-24766096)
chr6 (61-109)||(6453027-6453075)
chr6 (72-132)||(8514124-8514184)
[»] chr2 (4 HSPs)
chr2 (172-331)||(1087345-1087507)
chr2 (60-124)||(18587187-18587251)
chr2 (80-135)||(45226123-45226178)
chr2 (50-133)||(27671294-27671378)
[»] chr4 (4 HSPs)
chr4 (172-330)||(48475554-48475717)
chr4 (60-133)||(31052985-31053058)
chr4 (51-119)||(54441185-54441253)
chr4 (49-104)||(31053044-31053100)
[»] chr3 (2 HSPs)
chr3 (252-330)||(36812680-36812757)
chr3 (72-133)||(44267144-44267205)
[»] chr7 (8 HSPs)
chr7 (52-135)||(18358792-18358876)
chr7 (84-168)||(2383650-2383734)
chr7 (85-133)||(21906728-21906776)
chr7 (49-104)||(23540181-23540237)
chr7 (84-127)||(28229238-28229281)
chr7 (83-134)||(44411171-44411222)
chr7 (67-133)||(21222838-21222904)
chr7 (72-132)||(23540224-23540284)
[»] chr5 (4 HSPs)
chr5 (49-104)||(14717340-14717396)
chr5 (49-133)||(42347654-42347739)
chr5 (84-135)||(32892046-32892097)
chr5 (60-107)||(41018291-41018338)
[»] chr8 (5 HSPs)
chr8 (75-132)||(25502306-25502363)
chr8 (85-133)||(35948725-35948773)
chr8 (51-133)||(10172444-10172527)
chr8 (72-133)||(37639014-37639076)
chr8 (87-135)||(39380188-39380236)
[»] chr1 (2 HSPs)
chr1 (60-109)||(1226039-1226088)
chr1 (49-130)||(22336420-22336502)
[»] scaffold0527 (2 HSPs)
scaffold0527 (73-133)||(2052-2112)
scaffold0527 (73-133)||(10115-10175)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2427980 - 2428320
Alignment:
Q  1 aaataagtcaaatgacgaaataaattaggagggtttccaaattaaagaataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2427980 aaataagtcaaatgacgaaataaattaggagggtttccaaattaaagaataattattttacacatgcatcttatgatgtgttatcacatcaattaatgaa 2428079  T
Q  100 tatgacaattaatgtgtttttatattcattaattaaagtctcaacacgtcaatgaatgtatgcataaatgtgtttttatatagtttaatttcaattaaca 199  Q
    |||||||||||| ||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428080 tatgacaattaa-gtgttttcatattcattaattgaagtcacaacacgtcattgaatgtatgcataaatgtgtttttatatagtttaatttcaattaaca 2428178  T
Q  200 aacaaaaataccatcagagatgggaggttggagaagaagtcaatggtagatggagaagtgagattaaacaacaacaaaattactttcctaccctctcaat 299  Q
    ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2428179 aacaaaaataccatca-------caggttggagaagaagtcaatggtagatggagaagtgagattaaacaacaacaaaattacttttctaccctctcaat 2428271  T
Q  300 ctaatttaaaataatggtgttttggtccaaagtgaaaacgtgcatgttg 348  Q
    ||||||||||||||| ||||||| || |||||| |||| ||||||||||    
T  2428272 ctaatttaaaataatagtgtttttgttcaaagtaaaaatgtgcatgttg 2428320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 24766035 - 24766096
Alignment:
Q  72 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    ||||||||||  ||||||||||||||||||||||||   ||||||||| ||||| |||||||    
T  24766035 atgatgtgttgccacatcaattaatgaatatgacaacgcatgtgttttcatatttattaatt 24766096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 6453075 - 6453027
Alignment:
Q  61 acatgcatcttatgatgtgttatcacatcaattaatgaatatgacaatt 109  Q
    |||||||||| |||||||||| |||| ||||||||||||||||| ||||    
T  6453075 acatgcatctaatgatgtgttgtcacgtcaattaatgaatatgataatt 6453027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 8514184 - 8514124
Alignment:
Q  72 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaat 132  Q
    ||||||| || |||||||||||||| |||||||||| |  | ||||||||| |||||||||    
T  8514184 atgatgtattgtcacatcaattaataaatatgacaactcttatgtttttatcttcattaat 8514124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 331
Target Start/End: Original strand, 1087345 - 1087507
Alignment:
Q  172 tttttatatagtttaatttcaattaacaaacaaaaataccatcagagatgggaggttg---gagaagaagtcaatggtagatggagaagtgagattaaac 268  Q
    |||||||||| ||||||||||||| | ||| | ||| | ||||| ||||| || | ||   |||||||||||||||| ||||||||||||||||| ||||    
T  1087345 tttttatataatttaatttcaatttaaaaaaataaaaaacatcacagatgcgatgatgtttgagaagaagtcaatggaagatggagaagtgagataaaac 1087444  T
Q  269 aacaacaaaattactttcctaccctctcaatctaatttaaaataatggtgttttggtccaaag 331  Q
    ||||||||| ||||||| ||||||||| |||| |||||||| ||||||| || | ||||||||    
T  1087445 aacaacaaagttacttttctaccctctaaatccaatttaaagtaatggttttcttgtccaaag 1087507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 18587187 - 18587251
Alignment:
Q  60 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatat 124  Q
    ||||||||||  || |||||||||||| |||||||||||||||||| ||| || |||||||||||    
T  18587187 cacatgcatccaataatgtgttatcacgtcaattaatgaatatgactattcatttgtttttatat 18587251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 45226123 - 45226178
Alignment:
Q  80 ttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 135  Q
    |||||||||||| || | ||||||| |||| ||||||||||||||| |||||||||    
T  45226123 ttatcacatcaaatagtaaatatgataattcatgtgtttttatatttattaattaa 45226178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 27671294 - 27671378
Alignment:
Q  50 taattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    |||||||||| |||||  |||| || ||||||| |||||| ||||||||||||| | || | ||||| ||| |||||||||||||    
T  27671294 taattattttacacatttatctgataatgtgttgtcacataaattaatgaatataataactcatgtgctttcatattcattaatt 27671378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 48475554 - 48475717
Alignment:
Q  172 tttttatatagtttaatttcaattaacaaacaaaaatac--catcagagatgggaggttg---gagaagaagtcaatggtagatggagaagtgagattaa 266  Q
    |||||||||| ||||||||||||||| ||| ||||| |   ||||| |||||||| | ||   ||||||||||  |||| |||||||||| |||||| ||    
T  48475554 tttttatataatttaatttcaattaaaaaaaaaaaaaaaatcatcacagatgggatgatgtttgagaagaagttgatggaagatggagaaatgagataaa 48475653  T
Q  267 acaacaacaaaattactttcctaccctctcaatctaatttaaaataatggtgttttggtccaaa 330  Q
    ||||||||||| |||  || ||| ||||| ||||||||||||| ||||||| |||| |||||||    
T  48475654 acaacaacaaagttatctttctatcctctaaatctaatttaaagtaatggtttttttgtccaaa 48475717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 31052985 - 31053058
Alignment:
Q  60 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    ||||||||||  ||| ||||||   ||||| ||||||||||||||||| |  |||||||| |||||||||||||    
T  31052985 cacatgcatccaatgttgtgttgctacatcgattaatgaatatgacaactcgtgtgttttcatattcattaatt 31053058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 54441185 - 54441253
Alignment:
Q  51 aattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttt 119  Q
    ||||||||| || |||||||| ||||||||||  |||||||||||||||||| || |||| |||||||||    
T  54441185 aattattttacatatgcatctaatgatgtgttc-cacatcaattaatgaatacgataattcatgtgtttt 54441253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 31053100 - 31053044
Alignment:
Q  49 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatga 104  Q
    ||||||||||| ||||||||||  |||||||||| || | |||||||||||||||||    
T  31053100 ataattattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatga 31053044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 36812757 - 36812680
Alignment:
Q  252 gagaagtgagattaaacaacaacaaaattactttcctaccctctcaatctaatttaaaataatggtgttttggtccaaa 330  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||| |||||||||||||| |||||| |||| |||||||    
T  36812757 gagaaatgagataaaacaacagcaaa-ttactttcctaccctctaaatctaatttaaaacaatggtatttttgtccaaa 36812680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 44267205 - 44267144
Alignment:
Q  72 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    ||||||| || |||| |||| ||||||| | ||||| |||||||||||||| ||||||||||    
T  44267205 atgatgtattctcacgtcaaataatgaacacgacaactaatgtgtttttatgttcattaatt 44267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 18358792 - 18358876
Alignment:
Q  52 attatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 135  Q
    |||||||| ||||||||||  |||||||||| |||  |||||||||||||||||||| | ||||||||| || ||||||||||||    
T  18358792 attattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatgacaagtcatgtgttttcatgttcattaattaa 18358876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 2383734 - 2383650
Alignment:
Q  84 cacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaaagtctcaacacgtcaatgaatgtatgcataaat 168  Q
    ||||| |||||||| ||||||||||| || | |||||||||| ||||||||| || | ||||| ||| |||||| ||| ||||||    
T  2383734 cacattaattaatggatatgacaatttatttatttttatatttattaattaacgtgtgaacacatcattgaatgaatgtataaat 2383650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 21906728 - 21906776
Alignment:
Q  85 acatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    |||||||||||| |||||||||| | ||||||||| |||||||||||||    
T  21906728 acatcaattaattaatatgacaacttatgtgttttcatattcattaatt 21906776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 23540181 - 23540237
Alignment:
Q  49 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatga 104  Q
    ||||||||||| |||||| |||| ||||||||||||||| || ||||||||||||||    
T  23540181 ataattattttgcacatgtatctaatgatgtgttatcacgtctattaatgaatatga 23540237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 28229281 - 28229238
Alignment:
Q  84 cacatcaattaatgaatatgacaattaatgtgtttttatattca 127  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||    
T  28229281 cacatcaattaatggatatgacaattcatgtgttttcatattca 28229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 44411222 - 44411171
Alignment:
Q  83 tcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatta 134  Q
    |||||| ||||||||||||  |||| | ||||||||||||||||||||||||    
T  44411222 tcacattaattaatgaatacaacaactcatgtgtttttatattcattaatta 44411171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 21222904 - 21222838
Alignment:
Q  67 atcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    |||| ||||| ||||  |||||||||||||||||||||||| | |  |||||||||||| |||||||    
T  21222904 atctaatgatatgttgacacatcaattaatgaatatgacaacttacatgtttttatatttattaatt 21222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 23540284 - 23540224
Alignment:
Q  72 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaat 132  Q
    |||||| ||| |||||||||||||| |||| ||||||| || | |||| ||||||||||||    
T  23540284 atgatgcgttgtcacatcaattaataaataagacaattcatatattttcatattcattaat 23540224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 14717396 - 14717340
Alignment:
Q  49 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatga 104  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  14717396 ataattattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatga 14717340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 42347654 - 42347739
Alignment:
Q  49 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    ||||||||||| | ||||||||  ||||||| ||||||||||||| ||||||||| |||| | || |||||| ||| |||||||||    
T  42347654 ataattattttacgcatgcatccaatgatgtattatcacatcaatgaatgaatataacaactcatttgttttcatactcattaatt 42347739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 32892097 - 32892046
Alignment:
Q  84 cacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 135  Q
    ||||||||| |||||||| ||||| | ||||||||| |||||||||||||||    
T  32892097 cacatcaatcaatgaatacgacaactcatgtgttttcatattcattaattaa 32892046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 41018338 - 41018291
Alignment:
Q  60 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaa 107  Q
    ||||||||||| ||||||||||  | ||||||||||||||||||||||    
T  41018338 cacatgcatctaatgatgtgttgccccatcaattaatgaatatgacaa 41018291  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 25502306 - 25502363
Alignment:
Q  75 atgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaat 132  Q
    ||||||| |||||||||||||||||||| |||| | ||||||||||||||| ||||||    
T  25502306 atgtgttgtcacatcaattaatgaatataacaacttatgtgtttttatattaattaat 25502363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 35948773 - 35948725
Alignment:
Q  85 acatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    |||||||||| |||||||||||||| || |||||||||||| |||||||    
T  35948773 acatcaattagtgaatatgacaattcatatgtttttatatttattaatt 35948725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 10172527 - 10172444
Alignment:
Q  51 aattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    ||||||||| ||||||||||  |||||| ||| |||| ||||||| |||||||||||| | || |||||| | |||||||||||    
T  10172527 aattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatgacaactcatatgttttcacattcattaatt 10172444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 37639014 - 37639076
Alignment:
Q  72 atgatgtgttatcacatcaattaatgaatatgacaattaatgtg-tttttatattcattaatt 133  Q
    ||||||||||||||||||||||| | ||||||| || | ||||| |||||||||| |||||||    
T  37639014 atgatgtgttatcacatcaattagtaaatatgataacttatgtgttttttatatttattaatt 37639076  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 39380236 - 39380188
Alignment:
Q  87 atcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 135  Q
    |||||| |||||||||||||||| || ||||||| |||| |||||||||    
T  39380236 atcaatgaatgaatatgacaattcatatgtttttttatttattaattaa 39380188  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 1226039 - 1226088
Alignment:
Q  60 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaatt 109  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  1226039 cacatgcatctaatgatgtattatcacatcaattaataaatatgagaatt 1226088  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 22336420 - 22336502
Alignment:
Q  49 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcatta 130  Q
    ||||||||||| ||||||||||  || |||| | || ||||||||||||||||||||||| |  |||||||||| ||| ||||    
T  22336420 ataattattttacacatgcatcaaataatgtatgattacatcaattaatgaatatgacaactcgtgtgtttttaaatttatta 22336502  T

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Target: scaffold0527 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 2112 - 2052
Alignment:
Q  73 tgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    |||||| || |||| ||||||||| ||| |||| | |||||| ||||||||||||||||||    
T  2112 tgatgtattgtcacttcaattaataaatttgaccactaatgtatttttatattcattaatt 2052  T

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Target: scaffold0527; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 10175 - 10115
Alignment:
Q  73 tgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 133  Q
    |||||| || |||| ||||||||| ||| |||| | |||||| ||||||||||||||||||    
T  10175 tgatgtattgtcacttcaattaataaatttgaccactaatgtatttttatattcattaatt 10115  T

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