View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_low_15 (Length: 380)
Name: NF19168_low_15
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 36170497 - 36170859
Alignment:
| Q |
1 |
cgttacactcgtgagttcgagactcgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccattaccaagaagatcaccaaggatt |
100 |
Q |
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| T |
36170497 |
cgttacacttgtgagttcaagacttgccattttacgttgaaagttccatgaaacaccgtcaacgttaaatattccattaccaagaagatcaccaaggatt |
36170596 |
T |
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| Q |
101 |
gtagagaatggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtgggttgcatgtgatggtgttgttgagcacatgga |
200 |
Q |
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| T |
36170597 |
gtagagaatggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtgggttgcatgtgatggtgttgttgagcacatgga |
36170696 |
T |
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| Q |
201 |
tgtggatggttcctgttggtgaatttttgaggaggtgagtgtaccaatcactaaggtttataaactctttggcccaattcatggttatgtagctccaaca |
300 |
Q |
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| T |
36170697 |
tgtggatggttccagttggtgattttttgaggaggtgagtgtaccaatcactaaggtttataaactctttggcccaattcatggttatgtagctccaaca |
36170796 |
T |
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| Q |
301 |
aatgtggcagttgcaccatagtttcattcttgagatgaagataaggaatgagaagatggagaa |
363 |
Q |
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| T |
36170797 |
aatgtggcagttgcaccatagtttcattcttgagatgaagataaggaatgagaagatggagaa |
36170859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37672043 - 37672138
Alignment:
| Q |
1 |
cgttacactcgtgagttcgagactcgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccattaccaagaagatcaccaag |
96 |
Q |
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| T |
37672043 |
cgttacacttgtgagttctaggcttgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccatcatcaagaagatcaccaag |
37672138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 37672230 - 37672139
Alignment:
| Q |
96 |
ggattgtagagaat----ggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtgggttgcatgtgatggt |
183 |
Q |
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| T |
37672230 |
ggattgtagagaatggttggttttccttttggattgttatccaaacaggttttgagcatgtgttctatgttttgtgggttgcatgtgatggt |
37672139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 19931897 - 19931851
Alignment:
| Q |
80 |
ccaagaagatcaccaaggattgtagagaatggttttccttttgggta |
126 |
Q |
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| T |
19931897 |
ccaagaagatcaccaaggattgtagagaattgtttacctttagggta |
19931851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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