View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19168_low_18 (Length: 357)

Name: NF19168_low_18
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19168_low_18
NF19168_low_18
[»] chr1 (1 HSPs)
chr1 (8-234)||(37760666-37760892)
[»] chr7 (1 HSPs)
chr7 (8-232)||(44753379-44753605)
[»] chr3 (5 HSPs)
chr3 (80-232)||(35181727-35181879)
chr3 (131-232)||(24175424-24175525)
chr3 (8-56)||(24175299-24175347)
chr3 (8-56)||(35181905-35181953)
chr3 (80-114)||(24175372-24175406)
[»] chr2 (2 HSPs)
chr2 (233-341)||(42106799-42106902)
chr2 (138-229)||(13229148-13229239)
[»] scaffold0275 (1 HSPs)
scaffold0275 (183-229)||(23557-23603)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 37760666 - 37760892
Alignment:
Q  8 aatatgtgctcgggttcggaaaactgacttgtgttgataatacatgtgannnnnnnattnnnnnnnnnnnngttctgctgttaacacctgtgatatatat 107  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||       |||             || || ||||||||| ||||||||||||    
T  37760666 aatatatgctcgggttcggaaaactggcttgtgttgataatacatgtgatttttttattaaaaaagaaaaaattatgttgttaacacttgtgatatatat 37760765  T
Q  108 gtataatcgattttnnnnnnnnggtaatgtaaaggtaataaccggaagaaacaaggtagtgatccgtaaaaacaaatgagcctaagataggaaaattata 207  Q
    ||||||||||||||        | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||     
T  37760766 gtataatcgattttaaaaaaaagataatgtaaaggtaataaccggaagaaacaaggtagtgacccgtaaaaacaaatgagcctaagatgggaaaattatg 37760865  T
Q  208 caattgatccatgctaaaactcgcctt 234  Q
    |||||| || |||||||||||||||||    
T  37760866 caattggtctatgctaaaactcgcctt 37760892  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 44753605 - 44753379
Alignment:
Q  8 aatatgtgctcgggttcggaaaactgacttgtgttgataatacatgtgannnnnnnattnnnnnnnnnnnngttctgctgttaacacctgtgatatatat 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||       |||             || |||||||||||| ||||||||||||    
T  44753605 aatatgtgctcgggttcggaaaactggcttgtgttgataatacatgtgatttttttattaaaaaagaaaaaattatgctgttaacacttgtgatatatat 44753506  T
Q  108 gtataatcgattttnnnnnnnn--ggtaatgtaaaggtaataaccggaagaaacaaggtagtgatccgtaaaaacaaatgagcctaagataggaaaatta 205  Q
    ||||||||||||||          |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||    
T  44753505 gtataatcgattttaaaaaaaaaaggtaatgtaaaggtaataaccggaagaaacaaggtagtaacccgtaaaaacaaatgagcctaagatggaaaaatta 44753406  T
Q  206 tacaattgatccatgctaaaactcgcc 232  Q
    | |||||| ||||||||||||||||||    
T  44753405 tgcaattggtccatgctaaaactcgcc 44753379  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 35181879 - 35181727
Alignment:
Q  80 ttctgctgttaacacctgtgatatatatgtataatcgattttnnnnnnnnggtaatgtaaaggtaataaccggaagaaacaaggtagtgatccgtaaaaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| ||||| ||||||||| ||| |||||||||    
T  35181879 ttctgctgttaacacctgtgatatatatgtataatcgatttaaaaaaaaaggtaatgtaaaggtaataacgggaaggaacaaggtaatgacccgtaaaaa 35181780  T
Q  180 caaatgagcctaagataggaaaattatacaattgatccatgctaaaactcgcc 232  Q
     ||||||||||||||| |||||||||| |||||| ||||||||||||||||||    
T  35181779 taaatgagcctaagatgggaaaattatgcaattggtccatgctaaaactcgcc 35181727  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 24175424 - 24175525
Alignment:
Q  131 gtaatgtaaaggtaataaccggaagaaacaaggtagtgatccgtaaaaacaaatgagcctaagataggaaaattatacaattgatccatgctaaaactcg 230  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  24175424 gtaatgtaaaggtaataaccgaaagaaacaaggtagtgacccgtaaaaataaatgagcctaagatgggaaaattatgcaattggtccatgctaaaactcg 24175523  T
Q  231 cc 232  Q
    ||    
T  24175524 cc 24175525  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 24175299 - 24175347
Alignment:
Q  8 aatatgtgctcgggttcggaaaactgacttgtgttgataatacatgtga 56  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24175299 aatatgtgctcgggttcggaaaactggcttgtgttgataatacatgtga 24175347  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 35181953 - 35181905
Alignment:
Q  8 aatatgtgctcgggttcggaaaactgacttgtgttgataatacatgtga 56  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35181953 aatatgtgctcgggttcggaaaactggcttgtgttgataatacatgtga 35181905  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 24175372 - 24175406
Alignment:
Q  80 ttctgctgttaacacctgtgatatatatgtataat 114  Q
    ||||| |||||||||||||||||||||||||||||    
T  24175372 ttctgttgttaacacctgtgatatatatgtataat 24175406  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 233 - 341
Target Start/End: Complemental strand, 42106902 - 42106799
Alignment:
Q  233 ttttagaaaatgtgtagagcaacttgcataagcggaaacaaaactttgtggaaaacatttttataaatggataatgagaaaacataaagcttatgaaaga 332  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| || ||     ||||||||||||||||||||||||||||||||||||||||    
T  42106902 ttttagaagatgtgtagagcaacttgcataagcggaaacaaaactttgttgagaa-----ttataaatggataatgagaaaacataaagcttatgaaaga 42106808  T
Q  333 cgacctaac 341  Q
    |||||||||    
T  42106807 cgacctaac 42106799  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 13229239 - 13229148
Alignment:
Q  138 aaaggtaataaccggaagaaacaaggtagtgatccgtaaaaacaaatgagcctaagataggaaaattatacaattgatccatgctaaaactc 229  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||| || ||||||| ||| ||   |||||||||||||    
T  13229239 aaaggtaataaccggtagaaacaagatagtgactcgtaaaaacaaatgagcctaagatggggaaattatgcaactggctcatgctaaaactc 13229148  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 23603 - 23557
Alignment:
Q  183 atgagcctaagataggaaaattatacaattgatccatgctaaaactc 229  Q
    |||||||||| ||||||||||| ||||||||| |||||| |||||||    
T  23603 atgagcctaacataggaaaattttacaattgaaccatgcaaaaactc 23557  T

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