View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19168_low_19 (Length: 317)

Name: NF19168_low_19
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19168_low_19
NF19168_low_19
[»] chr8 (15 HSPs)
chr8 (19-307)||(36004082-36004370)
chr8 (65-182)||(25021798-25021915)
chr8 (54-294)||(35739858-35740098)
chr8 (63-173)||(28196196-28196306)
chr8 (71-208)||(24125040-24125177)
chr8 (77-294)||(39434685-39434903)
chr8 (63-294)||(3187973-3188205)
chr8 (97-182)||(500265-500350)
chr8 (54-167)||(38815289-38815402)
chr8 (78-138)||(10189562-10189622)
chr8 (69-136)||(4097373-4097440)
chr8 (54-132)||(27715343-27715421)
chr8 (69-138)||(8619824-8619893)
chr8 (68-132)||(27713949-27714013)
chr8 (68-174)||(6592584-6592690)
[»] chr5 (20 HSPs)
chr5 (63-297)||(33691923-33692158)
chr5 (54-211)||(37873593-37873750)
chr5 (63-294)||(13166781-13167013)
chr5 (68-296)||(35455965-35456194)
chr5 (54-208)||(43129529-43129683)
chr5 (70-138)||(15833070-15833138)
chr5 (63-294)||(27336697-27336929)
chr5 (68-294)||(32269668-32269895)
chr5 (63-294)||(35310452-35310684)
chr5 (92-167)||(9829352-9829426)
chr5 (63-158)||(43115465-43115560)
chr5 (223-297)||(38446331-38446405)
chr5 (70-167)||(25663031-25663128)
chr5 (111-211)||(3114118-3114218)
chr5 (54-138)||(34335332-34335416)
chr5 (54-138)||(42921692-42921776)
chr5 (63-138)||(430606-430681)
chr5 (63-154)||(38875642-38875733)
chr5 (112-209)||(8858969-8859066)
chr5 (89-138)||(15816576-15816625)
[»] scaffold0148 (1 HSPs)
scaffold0148 (54-173)||(33245-33364)
[»] chr7 (23 HSPs)
chr7 (63-294)||(5825277-5825507)
chr7 (78-297)||(28517155-28517375)
chr7 (54-197)||(19277288-19277431)
chr7 (68-174)||(21326830-21326936)
chr7 (54-167)||(43856869-43856982)
chr7 (54-136)||(9281161-9281243)
chr7 (54-136)||(9292132-9292214)
chr7 (54-174)||(22197981-22198101)
chr7 (54-174)||(22239720-22239840)
chr7 (54-138)||(27521466-27521550)
chr7 (70-158)||(30216066-30216154)
chr7 (63-167)||(40726479-40726583)
chr7 (54-294)||(4501254-4501494)
chr7 (54-174)||(982944-983064)
chr7 (34-149)||(45613859-45613974)
chr7 (56-167)||(47679122-47679233)
chr7 (63-137)||(2904369-2904443)
chr7 (95-136)||(36558898-36558939)
chr7 (225-294)||(45613713-45613782)
chr7 (54-174)||(10905113-10905232)
chr7 (54-138)||(32584596-32584680)
chr7 (72-128)||(38839337-38839393)
chr7 (70-138)||(48539192-48539260)
[»] chr3 (17 HSPs)
chr3 (72-138)||(38146069-38146135)
chr3 (54-138)||(52741540-52741624)
chr3 (63-136)||(7502041-7502115)
chr3 (68-138)||(54508412-54508482)
chr3 (54-294)||(53785704-53785945)
chr3 (54-174)||(37132991-37133111)
chr3 (111-294)||(39583100-39583284)
chr3 (54-142)||(51234611-51234699)
chr3 (63-182)||(26772762-26772881)
chr3 (48-138)||(7900847-7900937)
chr3 (54-138)||(37992327-37992411)
chr3 (54-182)||(44198762-44198890)
chr3 (54-182)||(3443296-3443424)
chr3 (69-173)||(43123155-43123259)
chr3 (70-208)||(49017974-49018112)
chr3 (54-158)||(26856770-26856874)
chr3 (81-137)||(46940799-46940855)
[»] chr6 (10 HSPs)
chr6 (54-294)||(4206467-4206708)
chr6 (63-209)||(17249262-17249408)
chr6 (63-208)||(959584-959729)
chr6 (53-167)||(4165921-4166035)
chr6 (69-137)||(13398211-13398279)
chr6 (63-294)||(34304500-34304732)
chr6 (63-173)||(33220704-33220814)
chr6 (63-136)||(29338109-29338182)
chr6 (188-297)||(12401460-12401570)
chr6 (70-136)||(24016348-24016414)
[»] chr4 (26 HSPs)
chr4 (23-294)||(53619550-53619822)
chr4 (63-214)||(55933414-55933563)
chr4 (54-182)||(56462091-56462218)
chr4 (54-121)||(38535614-38535681)
chr4 (63-294)||(50000796-50001029)
chr4 (54-134)||(34107728-34107808)
chr4 (54-138)||(50483224-50483308)
chr4 (63-182)||(26521492-26521611)
chr4 (87-138)||(45760862-45760913)
chr4 (74-144)||(24719949-24720019)
chr4 (53-294)||(25504289-25504529)
chr4 (112-304)||(30940600-30940793)
chr4 (54-138)||(7536599-7536683)
chr4 (63-211)||(12918327-12918475)
chr4 (54-138)||(53098416-53098500)
chr4 (111-274)||(132437-132603)
chr4 (63-138)||(3330000-3330075)
chr4 (91-130)||(22019051-22019090)
chr4 (111-182)||(23255756-23255827)
chr4 (34-137)||(50462975-50463078)
chr4 (54-136)||(600722-600804)
chr4 (223-301)||(23809551-23809629)
chr4 (68-167)||(28739914-28740014)
chr4 (87-211)||(31847115-31847239)
chr4 (90-154)||(48656922-48656986)
chr4 (235-295)||(56461977-56462037)
[»] chr1 (19 HSPs)
chr1 (63-294)||(34644570-34644802)
chr1 (63-294)||(45659518-45659751)
chr1 (54-174)||(20259789-20259909)
chr1 (54-294)||(29169665-29169905)
chr1 (54-167)||(28041126-28041239)
chr1 (69-136)||(50314654-50314721)
chr1 (101-174)||(19035489-19035562)
chr1 (25-138)||(35550103-35550216)
chr1 (54-174)||(21472998-21473118)
chr1 (54-174)||(22346890-22347010)
chr1 (20-138)||(2898663-2898780)
chr1 (94-138)||(15584909-15584953)
chr1 (82-182)||(25375817-25375917)
chr1 (63-138)||(43831604-43831679)
chr1 (63-137)||(2764483-2764557)
chr1 (70-216)||(7433234-7433380)
chr1 (53-130)||(17307399-17307476)
chr1 (96-137)||(23993473-23993514)
chr1 (54-155)||(38731604-38731705)
[»] chr2 (18 HSPs)
chr2 (63-294)||(4412937-4413169)
chr2 (225-305)||(10579639-10579719)
chr2 (63-294)||(28225004-28225236)
chr2 (54-174)||(9685407-9685527)
chr2 (57-173)||(34186055-34186170)
chr2 (70-207)||(5532431-5532567)
chr2 (101-174)||(19161775-19161848)
chr2 (69-138)||(33612575-33612644)
chr2 (54-138)||(41867936-41868020)
chr2 (63-138)||(2888520-2888595)
chr2 (72-142)||(44720335-44720406)
chr2 (95-128)||(5404964-5404997)
chr2 (111-294)||(23484809-23484993)
chr2 (68-139)||(20142752-20142823)
chr2 (223-293)||(18744826-18744896)
chr2 (111-151)||(2886630-2886670)
chr2 (90-138)||(3968437-3968485)
chr2 (54-138)||(18744982-18745066)
[»] scaffold0186 (1 HSPs)
scaffold0186 (62-211)||(10363-10516)
[»] scaffold0490 (1 HSPs)
scaffold0490 (54-182)||(6329-6457)
[»] scaffold1768 (1 HSPs)
scaffold1768 (68-294)||(55-282)
[»] scaffold0009 (1 HSPs)
scaffold0009 (63-138)||(103110-103185)
[»] scaffold0493 (1 HSPs)
scaffold0493 (73-138)||(8544-8609)
[»] scaffold0031 (1 HSPs)
scaffold0031 (74-138)||(49426-49490)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 36004082 - 36004370
Alignment:
Q  19 ctatgagacataatgttgttatccatgaaccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggta 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36004082 ctatgagacataatgttgttatccatgacccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggta 36004181  T
Q  119 taaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctgatctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  36004182 taaaaacatgttgattgtcataacgcactttgtcatatttagccactttactttacccaactttagggactgcttgccccaccgtaaaagccctgatctt 36004281  T
Q  219 caatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacatttgttggcctatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  36004282 caatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacctagtcgtacaccataacattcgttggcctatg 36004370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 25021915 - 25021798
Alignment:
Q  65 gatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccac 164  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||| | ||| |||||| ||||||||  ||||    
T  25021915 gatggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacacactttctcatatttcaccac 25021816  T
Q  165 ttttcttgacccaacttt 182  Q
    ||| |||||| |||||||    
T  25021815 tttgcttgacacaacttt 25021798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 294
Target Start/End: Complemental strand, 35740098 - 35739858
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||||||||| |||||||| ||||||    ||| ||||||| |  ||| ||||||||||||||||||||||| ||| | |||| |||    
T  35740098 aactctatgtagaaggtcaacaatctctggtgctaggaaactgaaagtgtcaaaagctaattgtataaaaacatgttgattgtcagaacccgctttctca 35739999  T
Q  154 tatttagccacttttcttgacccaacttt-agggactgcttgtcccaccgtaaaagccctgatcttcaatccacaagtggaaaaacctcagtcaagtcca 252  Q
    | ||| |||||||| ||| || ||||||| ||||| ||  ||||| |||||||||| || || ||| |  |||| |||||  ||||| ||||||||||||    
T  35739998 tgtttggccactttgcttaacacaacttttaggga-tgtctgtcctaccgtaaaaggcccgaccttaatcccactagtggtgaaaccccagtcaagtcca 35739900  T
Q  253 cacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    ||| ||||| | | ||||||||||| || |||||||||||||    
T  35739899 cacatgcatgttttcctcctacccattcatacaccataacat 35739858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 28196196 - 28196306
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||||||   |||||||||||||||||||| ||| ||||||| |||||| |||| |||||||    
T  28196196 tagatggtcaacaacctatggtgctaggaagacaaaagtgtcaaaaacaaatggtataaaaacatgtttattatcataacacactttctcatgtttagcc 28196295  T
Q  163 acttttcttga 173  Q
     |||| |||||    
T  28196296 gctttacttga 28196306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 24125040 - 24125177
Alignment:
Q  71 caacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttct 170  Q
    ||||||||||||||| |||||| |||||| ||||||| | ||||||||||||| |||||||||||||| | | | |||| |||| ||| |||| ||| ||    
T  24125040 caacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgctttctcatgtttggccattttgct 24125139  T
Q  171 tgacccaactttagggactgcttgtcccaccgtaaaag 208  Q
    |||  || ||||  || |||||||||||||||||||||    
T  24125140 tgatgcagcttttagggctgcttgtcccaccgtaaaag 24125177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 294
Target Start/End: Original strand, 39434685 - 39434903
Alignment:
Q  77 cctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgaccc 176  Q
    |||||| || ||||||||||||| |||||||   ||||||||||||| |||||||||||||| ||| | |||| |||| ||| |||||||| |||||| |    
T  39434685 cctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgc 39434784  T
Q  177 aactttagggactgcttgtcccaccgtaaaagcc-ctgatcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacc 275  Q
    ||||||  |  || | ||||| || ||||||||| |    | | || ||||||||||  ||||| ||||||||| ||||| ||||| | | ||||| |||    
T  39434785 aacttttagagcttcctgtcctactgtaaaagcctccacccctaaacccacaagtggtgaaaccccagtcaagtacacacatgcatgttttcctccaacc 39434884  T
Q  276 cagtcgtacaccataacat 294  Q
    ||  |||||||||||||||    
T  39434885 catccgtacaccataacat 39434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 3187973 - 3188205
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||| ||||||||||| || ||||||| | ||| | ||||| | ||||||||||||| |||||||||||||| ||| | |||  |||| ||| |||    
T  3187973 tagaaggttaacaacctctgatgctaggaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttcctcatgttttgcc 3188072  T
Q  163 acttttcttgacccaac-tttagggactgcttgtcccaccgtaaaagccctgatcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    ||||| |||||  |||| ||||| | || | ||||| ||||||||||||| || | | || ||||||||||  ||||| ||  |||| |||||| |||||    
T  3188073 actttgcttgatgcaacttttagaggcttcctgtcctaccgtaaaagccccgaccctaaacccacaagtggtgaaaccccacacaaggccacacatgcat 3188172  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | ||||| | |||  |||||||||||||||    
T  3188173 gttttcctccaatccatccgtacaccataacat 3188205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 500265 - 500350
Alignment:
Q  97 aaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaacttt 182  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||| |  ||| |||| ||| |||||||| |||||| |||||||    
T  500265 aaaatgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttt 500350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 38815289 - 38815402
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||| ||||||||| |||||||   ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| |||    
T  38815289 aactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctca 38815388  T
Q  154 tatttagccacttt 167  Q
    | ||| ||||||||    
T  38815389 tgtttggccacttt 38815402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 10189562 - 10189622
Alignment:
Q  78 ctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||| ||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  10189562 ctctagtgctaggaagccaaaaatgtcaaatgcaaatgatataaaaacatgttgattgtca 10189622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 4097440 - 4097373
Alignment:
Q  69 gtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    |||||||||||||| || ||| ||| ||||||| ||||||||||||  |||||||| |||||||||||    
T  4097440 gtcaacaacctctgatgctagaaaggcaaaaatttcaaatgtaaatcatataaaaatatgttgattgt 4097373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 27715343 - 27715421
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttga 132  Q
    ||||||||||||| |||||||||| | || |  |||||||  |||||| ||||| ||||||||||||||| ||||||||    
T  27715343 aactctttttagaaggtcaacaacttatgatactaggaagctaaaaatatcaaacgtaaatggtataaaagcatgttga 27715421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 8619824 - 8619893
Alignment:
Q  69 gtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    ||||||||||||||||| ||| ||| ||||||||| |||   ||||||||||||| || |||||||||||    
T  8619824 gtcaacaacctctggtgttagaaagccaaaaatgttaaaaacaaatggtataaaagcacgttgattgtca 8619893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 27714013 - 27713949
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttga 132  Q
    |||||||||| | || || ||||||| ||||||| ||||| ||||||||||||||| ||||||||    
T  27714013 ggtcaacaacttatgatgctaggaagccaaaaatatcaaacgtaaatggtataaaagcatgttga 27713949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 6592584 - 6592690
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 167  Q
    |||||||||||||||| | ||||||    ||| ||||||| | ||||||| ||||| |||||||||||| | ||| | |||| |||| ||| ||||||||    
T  6592584 ggtcaacaacctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttggccacttt 6592683  T
Q  168 tcttgac 174  Q
     ||||||    
T  6592684 gcttgac 6592690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 297
Target Start/End: Complemental strand, 33692158 - 33691923
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||  ||||| || || |||| | ||| ||||||| | |||||||| |||| |||||||||||||||||| |  |||||||| ||| |||    
T  33692158 tagaaggtcaacagtctctgatgctaagaagccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggcc 33692059  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    ||||| |||||| || ||||  || |||| ||||| ||||||||||||| ||  | | || ||||||||||  ||||||||||||||||||||| |||||    
T  33692058 actttgcttgacgcagcttttaggcctgcctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcat 33691959  T
Q  262 atgtccctcctacccagtcgtacaccataacatttg 297  Q
     | | ||||| |||||  ||||||||||||||||||    
T  33691958 gttttcctccaacccatccgtacaccataacatttg 33691923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 37873750 - 37873593
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||||||| ||||| ||||||| | |||||||||||||||||||||||||||| ||| | |||| |||    
T  37873750 aactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctca 37873651  T
Q  154 tatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccc 211  Q
    | ||| |||||||| |||||| |||||||  |  |||  ||||| |||||||||||||    
T  37873650 tgtttggccactttgcttgacgcaacttttagagctgtctgtcctaccgtaaaagccc 37873593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 294
Target Start/End: Complemental strand, 13167013 - 13166781
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||  ||||| || ||||||| | ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| |||| |||||||    
T  13167013 tagaaggtcaacagtctctgatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttagcc 13166914  T
Q  163 acttttcttgaccca-actttagggactgcttgtcccaccgtaaaagccctgatc--ttcaatccacaagtggaaaaacctcagtcaagtccacacgtgc 259  Q
    ||||| |||||| || | |||||||  ||  |||||||||||||||||||| | |  |  |||||||||||||  ||||| ||||||||||||||| |||    
T  13166913 actttgcttgacgcagattttaggg-ttgtctgtcccaccgtaaaagccctaacccataaaatccacaagtggtgaaacc-cagtcaagtccacacatgc 13166816  T
Q  260 atatgtccctcctacccagtcgtacaccataacat 294  Q
    || | | ||||| |||||  |||| ||||||||||    
T  13166815 atgttttcctccaacccatccgtagaccataacat 13166781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 296
Target Start/End: Original strand, 35455965 - 35456194
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 167  Q
    |||||||| ||||||||| ||||||| ||||| ||||||| | ||| ||||||||| |||||||||||| | ||| | |||| |||| |||  ||| |||    
T  35455965 ggtcaacatcctctggtgctaggaagccaaaattgtcaaaagcaaaaggtataaaagcatgttgattgttagaacacgctttctcatgtttgaccatttt 35456064  T
Q  168 tcttgacccaactttagggactgcttgtcccaccgtaaaagccctgatcttcaatcc-acaagtggaaaaacctcagtcaagtccacacgtgcatatgtc 266  Q
     ||| || |||||||  || || | |  || |||||||||| || || |   ||||| || ||||| |||||| | ||||||||||||| ||||||| |     
T  35456065 acttaacacaactttttgggctacctaccctaccgtaaaaggccggacccctaatcctacgagtggcaaaaccccggtcaagtccacacatgcatattta 35456164  T
Q  267 cctcctacccagtcgtacaccataacattt 296  Q
    |||||||||||   ||||||||||||||||    
T  35456165 cctcctacccatctgtacaccataacattt 35456194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 43129529 - 43129683
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||| ||| ||||||| ||||||  | ||||||||||| | |||||||| ||||||||||||||||||| ||| |  ||| |||    
T  43129529 aactctctgtagaaggtcaaaaacatctggtgttaggaaaccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctca 43129628  T
Q  154 tatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaag 208  Q
    | |||  ||||||| |||||| || ||||  ||||||  ||||| ||||||||||    
T  43129629 tgtttgaccactttgcttgacgcatcttttaggactgaatgtccaaccgtaaaag 43129683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 15833070 - 15833138
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||||| ||||||| ||||||||||||| ||||||| |||||||| ||||||| || ||||||||||    
T  15833070 tcaacaacatctggtgctaggaagtcaaaagtgtcaaacgtaaatggaataaaaatatcttgattgtca 15833138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 27336697 - 27336929
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||  |||||| || ||||||| || || ||||||| | |||||||||||||  ||||||||||||| ||| |  ||| |||| |||  ||    
T  27336697 tagaaggtcaactgcctctgatgctaggaagccacaagtgtcaaaagcaaatggtataaaagtatgttgattgtcagaacacgatttctcatgtttgacc 27336796  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    ||||| |||||| |||||||  || |||  ||||| |  ||||||||||  |  | | || ||||||||||  ||||| ||||||||||||||| |||||    
T  27336797 actttgcttgacgcaacttttagggctgtctgtcctattgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcat 27336896  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | ||||| |||||  |||||||||||||||    
T  27336897 gttttcctccaacccatccgtacaccataacat 27336929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 32269895 - 32269668
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 167  Q
    |||||||||||||| ||| |||||| || ||| | ||||| | ||||||||||||| | |||||||||||| ||| |||||| |||| |||  |||||||    
T  32269895 ggtcaacaacctctagtgctaggaaatcgaaagtatcaaaagcaaatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgaccacttt 32269796  T
Q  168 tcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtc 266  Q
      ||||  || ||||  ||  ||| ||||| ||| |||||| || ||  | | | |||| ||||||  ||||| |||||||||| |||| ||||| | |     
T  32269795 ggttgatgcagcttttagggttgcatgtcctaccataaaaggcccgacacctaattccagaagtggtgaaaccccagtcaagtctacacatgcatgtttt 32269696  T
Q  267 cctcctacccagtcgtacaccataacat 294  Q
    |||||||||||  |||||||||||||||    
T  32269695 cctcctacccatccgtacaccataacat 32269668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 35310452 - 35310684
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||| |||| |||||| ||  |||||| | ||| ||||||| | | ||||||||||| |||||||||||||| |||   |||| |||| ||| |||    
T  35310452 tagaaggttaacagcctctgatgccaggaagccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcagaacatgctttctcatgtttggcc 35310551  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    ||||| |||||| || ||||  ||  ||  ||||| ||||||||||||| ||  | | || ||||||||||  ||||| || |||||||||||| |||||    
T  35310552 actttgcttgacgcatcttttagggttgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcat 35310651  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | ||||| |||||  |||||| ||||||||    
T  35310652 gttttcctccaacccatccgtacatcataacat 35310684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 9829426 - 9829352
Alignment:
Q  92 agtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 167  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||| ||| || ||| ||||  |||||||||||    
T  9829426 agtcaaaagtgtcaaatataaatggtataaaagcatgttgattgtcaaaacacattttatcat-gttagccacttt 9829352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 43115560 - 43115465
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatattt 158  Q
    |||| ||||||||| |||||||| || ||||||| || ||||||| | ||||| ||| ||| |||||||||||||| ||| | |||| ||||||||    
T  43115560 tagaaggtcaacaatctctggtgttacgaagtcagaagtgtcaaaagcaaatgctatgaaagcatgttgattgtcaaaacacgctttctcatattt 43115465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 38446331 - 38446405
Alignment:
Q  223 ccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacatttg 297  Q
    ||||||||||  ||||||||||||||||||||| ||||| | |  |||| |||||  ||||||||||||||||||    
T  38446331 ccacaagtggtgaaacctcagtcaagtccacacatgcatgttttactccaacccatccgtacaccataacatttg 38446405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 25663128 - 25663031
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 167  Q
    |||||||| |||| || |||||||   ||| ||||||| | |||||||||||||||||||||||| ||| ||| | |||| |||| ||| ||||||||    
T  25663128 tcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttgattatcagaacacgctttctcatgtttggccacttt 25663031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 3114218 - 3114118
Alignment:
Q  111 aaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagcc 210  Q
    |||||||||||||||||||||| ||||| |||   |||| |||| ||| ||||||||  ||||  |||||||  || |||| ||||| ||||||||||||    
T  3114218 aaatggtataaaaacatgttgactgtcagaacatgctttctcatgtttggccactttgtttgatgcaacttttagggctgcctgtcctaccgtaaaagcc 3114119  T
Q  211 c 211  Q
    |    
T  3114118 c 3114118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 34335332 - 34335416
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| |||||||| |||||||||  || ||||| ||| |||||||   ||||||||||||| ||||||||||||||    
T  34335332 aactctatgtagaaggtcaacagcctctggtgtcagaaagtcgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtca 34335416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 42921692 - 42921776
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| || ||||||||||||||| ||||||  | ||| ||||| | | ||||||||||||| ||||||||||||||    
T  42921692 aactctatgtagaaggccaacaacctctggtgctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtca 42921776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 430606 - 430681
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||| |||||||  |||||| || || |||| ||||| ||||||| | ||||||||||||| ||||||||||||||    
T  430606 tagaaggtcaactgcctctgatgctatgaagacaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 430681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 38875642 - 38875733
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcat 154  Q
    |||| ||||| || ||||||||| |||||||   ||| |||||||   |||||||| ||||||||||||||||||| ||| |||||| ||||    
T  38875642 tagaaggtcagcagcctctggtgctaggaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtcagaacacactttctcat 38875733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 8858969 - 8859066
Alignment:
Q  112 aatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagc 209  Q
    |||| |||||||||||||||||||||| ||| | |||| |||| |||  | ||||| |||||| ||  |||  ||  |||||||||||||||||||||    
T  8858969 aatgatataaaaacatgttgattgtcagaacacgctttctcatgtttgactactttgcttgacgcagttttgtgggttgcttgtcccaccgtaaaagc 8859066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 15816576 - 15816625
Alignment:
Q  89 ggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    ||||||||||| | |||||||||||||| ||||||| || ||||||||||    
T  15816576 ggaagtcaaaagtttcaaatgtaaatggaataaaaatatcttgattgtca 15816625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 33245 - 33364
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||||||  | ||||||||||| |||||||||||||||||||||||||||||| ||| | |||| |||    
T  33245 aactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcagaacacgctttctca 33344  T
Q  154 tatttagccacttttcttga 173  Q
    | |||||||||||| |||||    
T  33345 tgtttagccactttgcttga 33364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 5825277 - 5825507
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||||||||||||| ||||| | | ||| ||||||| |||||||||||||||||||||||||||||||||| | | ||||||| |||   |    
T  5825277 tagaaggtcaacaacctctggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtcataacacgcattgtcatgttt--gc 5825374  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    ||||| |||||  || ||||  || || | |||||  |||||||||||  ||  | | || ||||||||||  ||||| ||||||||||||||| |||||    
T  5825375 actttgcttgatgcagcttttagggcttcctgtcctgccgtaaaagcctcgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcat 5825474  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | ||||| ||||| ||||||||||||||||    
T  5825475 gttttcctccaacccattcgtacaccataacat 5825507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 297
Target Start/End: Complemental strand, 28517375 - 28517155
Alignment:
Q  78 ctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgaccca 177  Q
    ||||| || ||||||||||||| ||||||| | |||||||||||||||||||||||||||  ||| | |||| |||| ||| |||||||| |||||| ||    
T  28517375 ctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgca 28517276  T
Q  178 actttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctaccc 276  Q
     ||||  ||  ||  ||||| || ||||||||||  |  | | || ||||||||||  ||||| ||||||||||||||| | ||| | | ||||| ||||    
T  28517275 gcttttagggttgtctgtcctactgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatgttttcctccaaccc 28517176  T
Q  277 agtcgtacaccataacatttg 297  Q
    |  ||||||||||||||||||    
T  28517175 atccgtacaccataacatttg 28517155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 19277288 - 19277431
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||||||  | ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| |||    
T  19277288 aactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctca 19277387  T
Q  154 tatttagccacttttcttgacccaactttagggactgcttgtcc 197  Q
    | ||| || ||||| |||||| || ||||  ||||||| |||||    
T  19277388 tgtttggctactttgcttgacgcagcttttaggactgcctgtcc 19277431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 21326936 - 21326830
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 167  Q
    |||||||| ||||||||| |||||| || ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| |||| ||| ||||||||    
T  21326936 ggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccacttt 21326837  T
Q  168 tcttgac 174  Q
     ||||||    
T  21326836 gcttgac 21326830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 43856869 - 43856982
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||||||  ||||||||||||| | |||| |||||||  |||||||||||||| ||| | |||| |||    
T  43856869 aactctatgtagaaggtcaacaacctctggtgttaggaaaccaaaaatgtcaaaagcaaattgtataaacgcatgttgattgtcaaaacacgctttctca 43856968  T
Q  154 tatttagccacttt 167  Q
    | | ||||||||||    
T  43856969 tgtctagccacttt 43856982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 9281243 - 9281161
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    |||||| | |||| |||||||||| ||||||| |||||||  |||||||||||||  |||| |||||||| ||||||||||||    
T  9281243 aactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgt 9281161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 9292214 - 9292132
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    |||||| | |||| |||||||||| ||||||| |||||||  |||||||||||||  |||| |||||||| ||||||||||||    
T  9292214 aactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgt 9292132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 22197981 - 22198101
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||||||||||||||| || ||||||  | ||| || |||| | ||||||||||||||||||||||||||   ||| |||||| |||    
T  22197981 aactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacactttctca 22198080  T
Q  154 tatttagccacttttcttgac 174  Q
    | ||| | |||||| ||||||    
T  22198081 tgtttggtcactttgcttgac 22198101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 22239840 - 22239720
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||||||||||||||| || ||||||  | ||| || |||| | ||||||||||||||||||||||||||   ||| |||||| |||    
T  22239840 aactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacactttctca 22239741  T
Q  154 tatttagccacttttcttgac 174  Q
    | ||| | |||||| ||||||    
T  22239740 tgtttggtcactttgcttgac 22239720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 27521466 - 27521550
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| ||||||||||||||| || ||||||  ||||| ||||||| |||||| |||||||  ||||||||||||||    
T  27521466 aactctatgtagaaggtcaacaacctctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtca 27521550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 30216154 - 30216066
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatattt 158  Q
    ||||||| ||||| || ||||||  | ||| ||||||| | |||||||||||||||||||||||||||| ||| | |||| ||||||||    
T  30216154 tcaacaaactctgatgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcaaaacacgctttctcatattt 30216066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 40726583 - 40726479
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||||||||| || || |||| | ||| |||||||   |||||||||||||||||||||||||||| ||| || ||| | || ||| |||    
T  40726583 tagaaggtcaacaacctctgatgctatgaagccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcagaacacattttattatgtttggcc 40726484  T
Q  163 acttt 167  Q
    |||||    
T  40726483 acttt 40726479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 294
Target Start/End: Original strand, 4501254 - 4501494
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||| ||  ||||  ||||||| | ||||  ||||||| |||||||||||||| ||| | |||| |||    
T  4501254 aactctatgtagaaggtcaacaacctctggtgctagaaaaccaaag-tgtcaaaagcaaattatataaaagcatgttgattgtcagaacacgctttctca 4501352  T
Q  154 tatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtcca 252  Q
    | ||| ||||||||  ||||| || ||||  ||  || |||||| || ||||||| || ||  | | |  ||||||||||  ||||| |||||||||| |    
T  4501353 tgtttggccactttgtttgacgcagcttttagggttgtttgtcctacggtaaaaggcccgacacctaatcccacaagtggtgaaaccccagtcaagtcta 4501452  T
Q  253 cacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    ||| ||||| | | ||||||||| |  |||||||||||||||    
T  4501453 cacatgcatgttttcctcctacctatccgtacaccataacat 4501494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 982944 - 983064
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| || ||||||||||||||| ||| ||  | ||| | ||||| | ||||||||||||| |||||||||||||| ||| |  ||| |||    
T  982944 aactctatgtagaaggccaacaacctctggtgctagaaaaccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctca 983043  T
Q  154 tatttagccacttttcttgac 174  Q
    | ||| |||||||| ||||||    
T  983044 tgtttggccactttgcttgac 983064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 45613974 - 45613859
Alignment:
Q  34 ttgttatccatgaaccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgat 133  Q
    ||||||| ||||||| ||  |||||| | |||| ||  |||| ||||||||| | ||||  | ||| |||||||   |||||||||||||||||||||||    
T  45613974 ttgttatgcatgaacttttgaactctatgtagaaggctaacagcctctggtgcttggaaaccgaaagtgtcaaaatcaaatggtataaaaacatgttgat 45613875  T
Q  134 tgtcataacgcacttt 149  Q
    ||||| ||| ||||||    
T  45613874 tgtcagaacacacttt 45613859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 167
Target Start/End: Original strand, 47679122 - 47679233
Alignment:
Q  56 ctctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcata 155  Q
    |||| |||||| |||||||||||| || || ||||||  | ||||||||||| | |||| ||||||||  || |||||||| | ||| |||||| |||||    
T  47679122 ctctatttagaaggtcaacaacctgtgatgctaggaaaccgaaaatgtcaaacgcaaatagtataaaagtatattgattgtgagaacacactttctcata 47679221  T
Q  156 tttagccacttt 167  Q
    ||| | ||||||    
T  47679222 ttttgtcacttt 47679233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 2904369 - 2904443
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtc 137  Q
    |||| |||||||||||||| ||| ||||||| |||| |||||| |   ||||| ||||||| |||||||||||||    
T  2904369 tagaaggtcaacaacctctagtgctaggaagccaaacatgtcacaaacaaatgatataaaatcatgttgattgtc 2904443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 36558939 - 36558898
Alignment:
Q  95 caaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  36558939 caaaaatgtcaaatgcaaattatataaaaacatgttgattgt 36558898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 45613782 - 45613713
Alignment:
Q  225 acaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    ||||||||  ||||| |||||||||| |||| ||||| | | ||||||||||| ||||||| ||||||||    
T  45613782 acaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccattcgtacatcataacat 45613713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 10905113 - 10905232
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||||||||  |||||||| |||| |  ||||| ||||||| | ||||||||| ||| |||||||| ||||| ||| |  ||| |||    
T  10905113 aactctatgtagaaggtcaacatactctggtgctaggcaaccaaaagtgtcaaaagcaaatggtat-aaagcatgttgagtgtcagaacactttttctca 10905211  T
Q  154 tatttagccacttttcttgac 174  Q
    ||||| |||||||| ||||||    
T  10905212 tatttggccactttgcttgac 10905232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 32584596 - 32584680
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| |||||||||||||||||| ||||||    ||| ||||||| | ||||||| ||||| ||| ||||||||||    
T  32584596 aactctatctagaaggtcaacaacctctggtgctaggaaacataaagtgtcaaaagcaaatggtgtaaaagcatcttgattgtca 32584680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 38839337 - 38839393
Alignment:
Q  72 aacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatg 128  Q
    |||||||||| ||| ||||||||||||| ||||||| | ||||  ||||||||||||    
T  38839337 aacaacctctcgtgttaggaagtcaaaagtgtcaaaagcaaattatataaaaacatg 38839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 48539192 - 48539260
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| ||||||||| ||| ||  | ||| ||||||| | ||||||||||||| ||||||||||||||    
T  48539192 tcaacagcctctggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 48539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 38146069 - 38146135
Alignment:
Q  72 aacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38146069 aacaacctctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgattgtca 38146135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 52741624 - 52741540
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| |||||||||||||||||| ||||||  ||||| ||||||| | ||||||||||||| ||||||||||||||    
T  52741624 aactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 52741540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 7502115 - 7502041
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtata-aaaacatgttgattgt 136  Q
    |||| |||||||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||||||||||    
T  7502115 tagaaggtcaacaacctctggtgctaggaaaccaaaaatgtcaaaagaaaatggtataaaaaacatgttgattgt 7502041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 54508482 - 54508412
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||||||||||||||| ||| || |||||||||||||| | ||||| |||||||||||||| |||||||    
T  54508482 ggtcaacaacctctggtgctagaaaatcaaaaatgtcaaaagcaaatgatataaaaacatgttaattgtca 54508412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 294
Target Start/End: Original strand, 53785704 - 53785945
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||||||  | ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| ||     
T  53785704 aactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcg 53785803  T
Q  154 tatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtcca 252  Q
    | ||| ||||| || |||||| |  ||||| || |||| | ||| || ||||||| || ||  | | |  |||| |||||  ||||| |||||||||| |    
T  53785804 tgtttggccaccttacttgacgcggctttaagggctgcctatcctacggtaaaaggcccgacacctaatcccactagtggtgaaaccccagtcaagtcta 53785903  T
Q  253 cacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    ||| ||||| | | |||||||||||  ||||||||| |||||    
T  53785904 cacatgcatgttttcctcctacccatccgtacaccaaaacat 53785945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 37133111 - 37132991
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| || |||  | ||| ||| |||   |||||||||||||||||||||||||||| ||| | |||| |||    
T  37133111 aactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcagaacacgctttctca 37133012  T
Q  154 tatttagccacttttcttgac 174  Q
    | |||| ||||||| ||||||    
T  37133011 tgtttaaccactttgcttgac 37132991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 294
Target Start/End: Complemental strand, 39583284 - 39583100
Alignment:
Q  111 aaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagcc 210  Q
    ||||| ||||||| |||||||||||||| ||| | |||| |||| ||| |||||||| |||||| || ||||  || |||| | ||| ||| |||| | |    
T  39583284 aaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttagggctgcctatcctaccataaatggc 39583185  T
Q  211 ctgatcttcaatcc-acaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    | || | | ||||| |||||||| ||||||| |||||||||||| | ||||| | | |||||||||||  ||||||| |||||||    
T  39583184 ccgacccttaatcccacaagtggtaaaacctaagtcaagtccacgcatgcatgttttcctcctacccatccgtacactataacat 39583100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 51234611 - 51234699
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataac 142  Q
    |||||| | |||| ||||||||||||||| || ||| ||||| ||| |||||||  |||||||||||||| ||||||| ||||||||||    
T  51234611 aactctatgtagaaggtcaacaacctctgatgctagaaagtcgaaagtgtcaaaaataaatggtataaaagcatgttggttgtcataac 51234699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 26772762 - 26772881
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||  |||||| || ||||||| ||||| ||||||| | ||||||||||||| |||||||||||||| ||| |  ||| | || ||| |||    
T  26772762 tagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctgatgtttggcc 26772861  T
Q  163 acttttcttgacccaacttt 182  Q
    ||||| |||||| |||||||    
T  26772862 actttgcttgacacaacttt 26772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 7900847 - 7900937
Alignment:
Q  48 ccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||| ||||||| | |||| ||||||||||||||| || ||||||| | ||| |||||||   ||||||||||||| ||||||||||||||    
T  7900847 ccttcaaactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtca 7900937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 37992327 - 37992411
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||||| |||| |||||||||||||| ||| || |||| |||||   ||||| ||||||| ||||||| ||||||||||||||    
T  37992327 aactctttgtagaaggtcaacaacctctagtgctatgaagccaaaaccatcaaaagtaaatgatataaaatcatgttgattgtca 37992411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 44198762 - 44198890
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||| |||| |||| || |||  | ||| ||||||| | ||||||||||||| |||||||||| ||| ||| | |||| |||    
T  44198762 aactctatgtagaaggtcaacagcctcgggtgttaagaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctca 44198861  T
Q  154 tatttagccacttttcttgacccaacttt 182  Q
    | ||| |||||||| |||||| |||||||    
T  44198862 tgtttggccactttgcttgacgcaacttt 44198890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 3443424 - 3443296
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||| ||| ||||||    ||| ||||||  | ||||||||||||| |||||||||||| | ||  |||||| |||    
T  3443424 aactctatgtagaaggtcaacaacctctagtgctaggaaactgaaagtgtcaacagaaaatggtataaaagcatgttgattgttagaatacactttttca 3443325  T
Q  154 tatttagccacttttcttgacccaacttt 182  Q
    | ||| |||| ||| |||||| |||||||    
T  3443324 tgtttggccattttgcttgacgcaacttt 3443296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 43123155 - 43123259
Alignment:
Q  69 gtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccactttt 168  Q
    |||||||| || ||||| ||| || |||||| ||||||  |||||| |||||| |||||||||||||||| |||   |||| |||| ||||| ||||||     
T  43123155 gtcaacaaactatggtgctagaaaatcaaaagtgtcaatcgtaaatagtataacaacatgttgattgtcagaacatcctttatcatgtttagacactttg 43123254  T
Q  169 cttga 173  Q
    |||||    
T  43123255 cttga 43123259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 49017974 - 49018112
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttc 169  Q
    ||||||||||| |||| ||||||  | ||| ||| |||   |||||||||||||||||||||||||| | ||| |||||| |||| ||| | ||||||      
T  49017974 tcaacaacctcgggtgctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgt 49018073  T
Q  170 ttgacccaactttagggactgcttgtcccaccgtaaaag 208  Q
    || ||  ||||||  ||  ||||||||| ||||||||||    
T  49018074 tttacgtaactttcagggttgcttgtcctaccgtaaaag 49018112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 26856874 - 26856770
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||||||||  |||| ||| |||||| || |||  |||||| | | ||||||||||| |||||||||||||| ||| | |||| |||    
T  26856874 aactctatgtagaaggtcaacagtctctagtgctaggaaatcgaaagcgtcaaaagcagatggtataaaagcatgttgattgtcacaacacgctttatca 26856775  T
Q  154 tattt 158  Q
    |||||    
T  26856774 tattt 26856770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 46940855 - 46940799
Alignment:
Q  81 tggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtc 137  Q
    ||||| ||||| ||||||| |||||||   ||||||||||||| |||||||||||||    
T  46940855 tggtgctaggacgtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 46940799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 294
Target Start/End: Complemental strand, 4206708 - 4206467
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||||||  | ||| ||||||| | ||||| ||||||| |||||| ||||||| ||| | |||| |||    
T  4206708 aactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgctttctca 4206609  T
Q  154 tatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctgat-cttcaatccacaagtggaaaaacctcagtcaagtcca 252  Q
    | |||||||||||| |||||| | |||||   | |||| ||||| ||||||||||  ||||| | | |  ||||||||||  ||||| |||||||||| |    
T  4206608 tgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaagtcta 4206509  T
Q  253 cacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    ||| ||||| | | ||||| ||||| | ||||||||||||||    
T  4206508 cacatgcatgttttcctccaacccatttgtacaccataacat 4206467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 17249408 - 17249262
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||  |||||| || ||||||| ||||| ||||||| | ||||||||||||| |||||||||||||| ||| |||||| |||| ||| |||    
T  17249408 tagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggcc 17249309  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagc 209  Q
    |||||  ||||| |||||||  ||  || |||||| |||||||||||    
T  17249308 actttgtttgacgcaacttttagggttgtttgtcctaccgtaaaagc 17249262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 959584 - 959729
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||||||||||||| ||||||  | |||||||||||   |||||||||||| ||||||||||||||| ||| |  ||| ||||  ||||||    
T  959584 tagaaggtcaacaacctctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtcagaacacgttttctcatggttagcc 959683  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaag 208  Q
    ||||| |||||| |||||||  ||  || |||||| ||||||||||    
T  959684 actttgcttgacacaacttttagggttgtttgtcctaccgtaaaag 959729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 4166035 - 4165921
Alignment:
Q  53 aaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtc 152  Q
    ||||||| | |||| |||||||||||||||||| ||||||  | ||| ||||||| | ||||| ||||||| |||||||||||||| ||| | |||| ||    
T  4166035 aaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcagaacacgctttctc 4165936  T
Q  153 atatttagccacttt 167  Q
    || ||||||||||||    
T  4165935 atgtttagccacttt 4165921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 13398279 - 13398211
Alignment:
Q  69 gtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtc 137  Q
    ||||||||| |||| || ||||||||||||||| ||||| |||||| ||||||||| ||||||||||||    
T  13398279 gtcaacaacttctgatgttaggaagtcaaaaatatcaaaagtaaatagtataaaaatatgttgattgtc 13398211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 34304500 - 34304732
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||| | |||| || ||||||| | ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| |||| ||| |      
T  34304500 tagaaggtcaacatcatctgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggtt 34304599  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    | ||| |||||| || ||||  || ||   ||||| ||||||||||||| || || | || ||||||||||  ||||| || |||||||||||| |||||    
T  34304600 attttgcttgacgcagcttttagggctagctgtccaaccgtaaaagccccgactcctaaacccacaagtggtgaaaccccaatcaagtccacacatgcat 34304699  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | |||||  ||||  |||||||||||||||    
T  34304700 gttttcctccagcccatccgtacaccataacat 34304732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 33220814 - 33220704
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||||||| | || ||||||| | ||| ||||||| | ||||||||||||| ||||||||||||||  || | |||| |||| ||| |||    
T  33220814 tagaaggtcaacaacctcggatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaacacacgctttctcatgtttggcc 33220715  T
Q  163 acttttcttga 173  Q
    ||||| |||||    
T  33220714 actttgcttga 33220704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 29338182 - 29338109
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    |||| ||||||| | |||||||| |||||||||| || ||||||| | ||||||||||| | ||||||||||||    
T  29338182 tagaaggtcaacgatctctggtgctaggaagtcagaagtgtcaaaagcaaatggtataagagcatgttgattgt 29338109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 12401460 - 12401570
Alignment:
Q  188 ctgcttgtcccaccgtaaaagccctgatcttcaatcc-acaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacac 286  Q
    |||||||||| ||| |||||||||||| |   ||||| | ||||||  ||||| || ||||||| |||| ||||| | | |||||||||||  |||||||    
T  12401460 ctgcttgtcctaccataaaagccctgaaccataatcccataagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacac 12401559  T
Q  287 cataacatttg 297  Q
    |||||||||||    
T  12401560 cataacatttg 12401570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 24016348 - 24016414
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    |||||||| ||||||| ||||||  ||||| | ||||  | ||||||||||||||||||||||||||    
T  24016348 tcaacaacatctggtgctaggaaaccaaaactatcaatagcaaatggtataaaaacatgttgattgt 24016414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 53619550 - 53619822
Alignment:
Q  23 gagacataatgttgttatccatgaaccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaa 122  Q
    |||||||||  ||||||| ||| | |||| | ||||| | |||| |||||||  |||||| || ||||||||||||| |||||||   ||||||||||||    
T  53619550 gagacataacattgttatgcataaccctttagactctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaa 53619649  T
Q  123 aacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctgatct-tcaa 221  Q
    | |||||||||||||| ||| |  ||| |||| ||| |||||||| |||||| || ||||  ||  ||| ||||| || ||||||||||  | || | ||    
T  53619650 agcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcagcttttagggttgcctgtcctactgtaaaagcccccacctctaaa 53619749  T
Q  222 tccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
     ||||||||||  ||||| ||||||||||||||| ||||| | | ||||| || ||  |||||||||||||||    
T  53619750 cccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaactcatccgtacaccataacat 53619822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 55933563 - 55933414
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||||||  | || ||||||||| ||| ||||||| | ||||||||||||| |||||||||||| | |||  ||||| |||| ||| |||    
T  55933563 tagaaggtcaacaacct--gatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaaactttctcatgtttggcc 55933466  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga 214  Q
    |||||  ||||| |||||||  || |||  ||||| ||||||||||||||||    
T  55933465 actttgtttgacgcaacttttagggctgactgtcctaccgtaaaagccctga 55933414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 56462218 - 56462091
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| ||||||  ||||| |||| ||   |||||||||||||||||||||||||||| ||| | |||| |||    
T  56462218 aactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtcagaacacgctttatca 56462119  T
Q  154 tatttagccacttttcttgacccaacttt 182  Q
    | ||| ||||||||  ||||| |||||||    
T  56462118 tgttt-gccactttgtttgacgcaacttt 56462091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 38535681 - 38535614
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataa 121  Q
    |||||| | |||| ||| |||||||||||||| ||||||||||||| ||||||||| |||||||||||    
T  38535681 aactctatgtagagggtgaacaacctctggtgctaggaagtcaaaagtgtcaaatgcaaatggtataa 38535614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 294
Target Start/End: Complemental strand, 50001029 - 50000796
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaa-catgttgattgtcataacgcactttgtcatatttagc 161  Q
    |||| |||||||  |||||| || ||| ||| ||||| ||||||| | |||| |||| |||| |||||||||||||| ||| | |||| |||| |||  |    
T  50001029 tagaaggtcaactgcctctgatgctagaaagccaaaagtgtcaaaagcaaattgtattaaaagcatgttgattgtcagaacacgctttctcatgtttgac 50000930  T
Q  162 cacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctgatct-tcaatccacaagtggaaaaacctcagtcaagtccacacgtgca 260  Q
    |||||| |||||| || ||||  |  |||  ||||| |||||||||||||  | |  | || ||||||||||  ||||| ||||||||||||||| ||||    
T  50000929 cactttgcttgacgcagcttttagagctgtctgtcctaccgtaaaagcccccaccccttaacccacaagtggtgaaaccccagtcaagtccacacatgca 50000830  T
Q  261 tatgtccctcctacccagtcgtacaccataacat 294  Q
    | | | ||||| |||||  |||||||||||||||    
T  50000829 tgttttcctccaacccatccgtacaccataacat 50000796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 34107808 - 34107728
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgatt 134  Q
    |||||| | |||| |||||||| ||||||||| |||||| || ||| |||||||   ||||||||||||||||||||||||    
T  34107808 aactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgatt 34107728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 50483308 - 50483224
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| |||||||||||||||||| ||||||  | ||| |||| || | ||||||||||||| ||||||||||||||    
T  50483308 aactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtca 50483224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 26521492 - 26521611
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||| ||||||||| ||||||  ||||| |||  || | | ||| ||||||| |||||||||||||||||| |  ||| |||| |||||||    
T  26521492 tagaaggtcaacagcctctggtgctaggaaaccaaaagtgttgaaagcatatgatataaaagcatgttgattgtcataacacgttttttcatgtttagcc 26521591  T
Q  163 acttttcttgacccaacttt 182  Q
    |||||  ||||| |||||||    
T  26521592 actttgtttgacgcaacttt 26521611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 45760913 - 45760862
Alignment:
Q  87 taggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    ||||||||||||||||||||||| ||| | |||||||| |||||||||||||    
T  45760913 taggaagtcaaaaatgtcaaatgcaaaagatataaaaatatgttgattgtca 45760862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 24719949 - 24720019
Alignment:
Q  74 caacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgc 144  Q
    ||||||||| || ||||||| ||||| |||||||   ||||| |||||||||||||||||||||| |||||    
T  24719949 caacctctgttgttaggaagacaaaagtgtcaaacacaaatgatataaaaacatgttgattgtcagaacgc 24720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 294
Target Start/End: Original strand, 25504289 - 25504529
Alignment:
Q  53 aaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtc 152  Q
    ||||||| |||| | ||||||||  |||| ||| ||||||  ||||||||||||| | ||| ||||||||||||||| |||||| | ||| |  ||| ||    
T  25504289 aaactctatttaaaaggtcaacagtctctagtgctaggaaaccaaaaatgtcaaaagcaaacggtataaaaacatgtcgattgttagaacacgttttctc 25504388  T
Q  153 atatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtcc 251  Q
    || |||  ||| ||| |||||  |||||||||||  ||| ||||  |||||||||| |||||  | | |  ||||||||||  ||||||||||||||||     
T  25504389 atgtttgacca-tttgcttgatgcaactttaggg-ttgcctgtcataccgtaaaaggcctgacgcctaatcccacaagtggtgaaacctcagtcaagtct 25504486  T
Q  252 acacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    | || ||||| | |  ||||||||||  |||||||||||||||    
T  25504487 atacatgcatgtttttctcctacccatccgtacaccataacat 25504529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 304
Target Start/End: Complemental strand, 30940793 - 30940600
Alignment:
Q  112 aatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccc 211  Q
    |||||||||||| |||||||||||||| ||| | |||| |||| |||  ||||||| |||||| |||||||  ||  ||  ||||| |  |||||||       
T  30940793 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaacttttagggttgtctgtcctatggtaaaaggtt 30940694  T
Q  212 tga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacatttgttggcct 304  Q
    |||  ||| |  ||||||||||  |||||||||||||||| ||||  |||| | | || |||||||| ||||||||||||||||| || |||||    
T  30940693 tgacacttaatcccacaagtggcgaaacctcagtcaagtctacacaagcatgttttccacctacccattcgtacaccataacattcgtaggcct 30940600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 7536683 - 7536599
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| |||||||||||||||||| ||||||    ||| |||||||   |||| |||||||||||||||||||||||    
T  7536683 aactctatgtagaaggtcaacaacctctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtca 7536599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 12918475 - 12918327
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||| ||||| || ||||||||| ||| ||||||| |||||| ||||||||   |||||||||||| ||| |  ||| | || |||  ||    
T  12918475 tagaaggtcaacaatctctgatgctaggaagtcgaaagtgtcaaaagtaaatagtataaaagtgtgttgattgtcagaacacgatttcttatgtttgacc 12918376  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccc 211  Q
    |||||  ||||| |||||||  ||  || |||||| |||||||||||||    
T  12918375 actttgtttgacgcaacttttagggttgtttgtcctaccgtaaaagccc 12918327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 53098416 - 53098500
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| ||| ||||||||||| || ||||||  ||||||||||||| | ||| |||  |||||||||||||||||||    
T  53098416 aactctatgtagaaggttaacaacctctgatgctaggaaaccaaaaatgtcaaaaggaaacggttcaaaaacatgttgattgtca 53098500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 132437 - 132603
Alignment:
Q  111 aaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcc--caccgtaaaag 208  Q
    ||||||||||||| |||||||||||||| ||| |  ||| |||| ||| |||| ||| |||||| || ||||  || |||| |||||  |||||||||||    
T  132437 aaatggtataaaagcatgttgattgtcagaacacgatttctcatgttttgccattttgcttgacgcagcttttagggctgcctgtcctacaccgtaaaag 132536  T
Q  209 ccctgatcttcaatcc-acaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctac 274  Q
     || || |   ||||| ||||||||  ||||| ||||||||| ||||| ||||||| | ||||||||    
T  132537 tcccgacccctaatccaacaagtggtgaaaccccagtcaagttcacacatgcatattttcctcctac 132603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 3330000 - 3330075
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||| |||||||  |||||| || ||||||| ||||| ||||||| | |||| |||||||| ||||||||||||||    
T  3330000 tagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgtca 3330075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 22019051 - 22019090
Alignment:
Q  91 aagtcaaaaatgtcaaatgtaaatggtataaaaacatgtt 130  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  22019051 aagtcaaaaatgtcaaatgcaaattgtataaaaacatgtt 22019090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 23255756 - 23255827
Alignment:
Q  111 aaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaacttt 182  Q
    ||||||||||||| |||||| ||||||| ||| | |||| |||| ||| |||||||| |||||| |||||||    
T  23255756 aaatggtataaaagcatgttaattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 23255827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 50463078 - 50462975
Alignment:
Q  34 ttgttatccatgaaccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgat 133  Q
    ||||||| ||||  |||| |||||||   |||| ||||||||  ||||||||  ||||| |||||| ||||||| | ||||||||| ||| |||||||||    
T  50463078 ttgttatgcatggccctttaaactctacgtagaaggtcaacagtctctggtgtaaggaaatcaaaagtgtcaaaagcaaatggtatgaaagcatgttgat 50462979  T
Q  134 tgtc 137  Q
    ||||    
T  50462978 tgtc 50462975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 600804 - 600722
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    |||||| | |||| |||||||||||||||||| ||||||  | ||| || |||| | ||||||||||||| |||||| |||||    
T  600804 aactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaagtgacaaaagcaaatggtataaaagcatgttaattgt 600722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 23809629 - 23809551
Alignment:
Q  223 ccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacatttgttgg 301  Q
    ||||||||| |||||||||| |||||||||||| ||||  | || ||||||||||   ||||||||  |||||||||||    
T  23809629 ccacaagtgcaaaaacctcaatcaagtccacacatgcacgtttctctcctacccacctgtacaccaacacatttgttgg 23809551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 28739914 - 28740014
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaa-acatgttgattgtcataacgcactttgtcatatttagccactt 166  Q
    |||||||||| | ||||| ||||||||| ||| |||||||  |||||||||||||| ||||||| | ||||| ||| || ||| || | ||| |||||||    
T  28739914 ggtcaacaacttgtggtgttaggaagtcgaaagtgtcaaacataaatggtataaaacacatgttaactgtcacaacacaatttctcgtgtttggccactt 28740013  T
Q  167 t 167  Q
    |    
T  28740014 t 28740014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 31847115 - 31847239
Alignment:
Q  87 taggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttaggg 186  Q
    ||||||| ||||| ||||||| | |||||||| ||||||||||||| ||||| |||    ||| |||| |||  ||||||| |||||| || ||||  ||    
T  31847115 taggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcagaacatggtttctcatgtttgaccactttgcttgacgcagcttttagg 31847214  T
Q  187 actgcttgtcccaccgtaaaagccc 211  Q
     |||| ||||| || ||||||||||    
T  31847215 gctgcctgtcctactgtaaaagccc 31847239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 48656986 - 48656922
Alignment:
Q  90 gaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcat 154  Q
    |||||| ||| |||||||   ||||||||||||||||| ||||||| |||||| |||||| ||||    
T  48656986 gaagtcgaaagtgtcaaaaacaaatggtataaaaacattttgattgacataacacactttctcat 48656922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 56462037 - 56461977
Alignment:
Q  235 aaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacatt 295  Q
    ||||||||||||||||||||| ||||| | | || ||||| ||  ||||||||||||||||    
T  56462037 aaacctcagtcaagtccacacatgcatgttttccacctactcatccgtacaccataacatt 56461977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 34644570 - 34644802
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||||||||| || ||||||| | ||| |||||||   ||||||||||||| ||||| | |||||| ||| | |||| |||| ||| |||    
T  34644570 tagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtaggttgtcagaacacgctttctcatgtttggcc 34644669  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    |||||  ||||| |||||||  ||  ||||||||| ||||||||||||| ||  | | || ||||||||||  ||||| ||||||||||||||| |||||    
T  34644670 actttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcat 34644769  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | |||||  ||||  | |||||||||||||    
T  34644770 gttttcctccagcccatccatacaccataacat 34644802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 294
Target Start/End: Complemental strand, 45659751 - 45659518
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||| |||||||||||||||| || ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| || | ||| |||    
T  45659751 tagaaggtcaacagcctctggtgataggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggcc 45659652  T
Q  163 acttttcttgacccaac-tttagggactgcttgtcccaccgtaaaagccctgat-cttcaatccacaagtggaaaaacctcagtcaagtccacacgtgca 260  Q
    || || |||||| || | |||| || |||| ||||| || ||||||| || ||| | | |  ||||||||||  ||||| |||||||||| || | ||||    
T  45659651 accttacttgacgcagcttttaagggctgcatgtcctacggtaaaaggcccgatacctaatcccacaagtggtgaaaccccagtcaagtctacgcatgca 45659552  T
Q  261 tatgtccctcctacccagtcgtacaccataacat 294  Q
    | | | |||||||||||   |||||| |||||||    
T  45659551 tgttttcctcctacccatctgtacactataacat 45659518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 20259909 - 20259789
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||||||||||||| || |||  | ||| ||||||   ||||||||||||||||||||||||||||| ||| | |||| |||    
T  20259909 aactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcagaacacgctttctca 20259810  T
Q  154 tatttagccacttttcttgac 174  Q
    | |||| ||||||| ||||||    
T  20259809 tttttaaccactttgcttgac 20259789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 294
Target Start/End: Complemental strand, 29169905 - 29169665
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||| |||||||||||||| ||||||  | ||| ||||||| | ||||||||||||| |||||||||||||| ||| |  ||| ||     
T  29169905 aactctatgtagaaggttaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctcg 29169806  T
Q  154 tatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctgatcttcaatccacaagtggaaaaacctcagtcaagtccac 253  Q
    | ||| ||||| || |||||| |||||||| || |||  ||||| || ||||||| || ||     |||||  ||||||  ||||| |||||||||| ||    
T  29169805 tgtttggccaccttacttgacacaactttaagggctgtctgtcctacggtaaaaggcccgacacctaatcccaaagtggtgaaaccccagtcaagtctac 29169706  T
Q  254 acgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    || ||||| | | ||||||||| |  |||||||||||||||    
T  29169705 acatgcatgttttcctcctacctatccgtacaccataacat 29169665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 28041239 - 28041126
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||  ||||||||| ||||||  | ||| ||||||| | ||||||||||||||| |||||||||||| ||| |||||| |||    
T  28041239 aactctatgtagaaggtcaaccgcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctca 28041140  T
Q  154 tatttagccacttt 167  Q
    | ||| ||||||||    
T  28041139 tgtttggccacttt 28041126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 50314721 - 50314654
Alignment:
Q  69 gtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgt 136  Q
    ||||||||| ||| ||| |||||| | |||||||||||| ||||||||||||||| ||||||||||||    
T  50314721 gtcaacaacatcttgtgttaggaaataaaaaatgtcaaaagtaaatggtataaaagcatgttgattgt 50314654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 19035489 - 19035562
Alignment:
Q  101 tgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgac 174  Q
    ||||||| ||||||||||||||| |||||||||||||| ||| | |||| |||| ||| |||||||| ||||||    
T  19035489 tgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgac 19035562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 35550216 - 35550103
Alignment:
Q  25 gacataatgttgttatccatgaaccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaa 124  Q
    |||||||  ||||||| ||||| |||| |||||||||||||| || ||||||||| | ||| ||||||| ||| | ||||||| ||||||  |||| ||     
T  35550216 gacataacattgttatacatgatcctttaaactctttttagaaggccaacaacctatagtgctaggaagccaagagtgtcaaacgtaaataatatagaat 35550117  T
Q  125 catgttgattgtca 138  Q
     |||||||||||||    
T  35550116 tatgttgattgtca 35550103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 21472998 - 21473118
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||| ||||||||| ||||||     || ||||||| | |||||||||||||||||||||||||||| ||| | |||| |||    
T  21472998 aactctatgtagaaggtcaacagcctctggtgctaggaaactgcaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctca 21473097  T
Q  154 tatttagccacttttcttgac 174  Q
    | ||| |||| ||| ||||||    
T  21473098 tgtttggccattttacttgac 21473118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 22346890 - 22347010
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||||||||||||||| |  ||||||  | ||| ||||||| | ||| ||||||||  |||||||||||||| ||| | |||| |||    
T  22346890 aactctgtgtagaaggtcaacaacctctgctactaggaaaccgaaagtgtcaaaagcaaaaggtataaacgcatgttgattgtcagaacacgctttctca 22346989  T
Q  154 tatttagccacttttcttgac 174  Q
    ||||| |||||||| ||||||    
T  22346990 tatttggccactttgcttgac 22347010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 2898663 - 2898780
Alignment:
Q  20 tatgagacataatgttgttatccatgaaccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtat 119  Q
    |||||||||| || ||||||| ||||| | ||  |||||| | |||| |||||||||||||||||| ||||||  | ||| | ||||| | |||||||||    
T  2898663 tatgagacatgatattgttatgcatgatcttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtatcaaaagcaaatggtat 2898762  T
Q  120 aaaaacatgttgattgtca 138  Q
    |||||| | ||||||||||    
T  2898763 aaaaac-tattgattgtca 2898780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 15584909 - 15584953
Alignment:
Q  94 tcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||||||||||| | |||||||||| |||||||||||||||||    
T  15584909 tcaaaaatgtcaaacgcaaatggtatagaaacatgttgattgtca 15584953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 25375917 - 25375817
Alignment:
Q  82 ggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactt 181  Q
    |||||||||||| ||||| ||||||  | ||||||||||||||||||||||| || | |||    |||||||| ||| | |||||| |||||| ||||||    
T  25375917 ggtgataggaagccaaaagtgtcaatagcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaactt 25375818  T
Q  182 t 182  Q
    |    
T  25375817 t 25375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 43831679 - 43831604
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||| ||||||||| |||||||  || || | ||||| ||||| | || |||||||||||||||||||||||||||    
T  43831679 tagaaggtcaacaatctctggttctaagaggacaaaagtgtcacaagtcaatggtataaaaacatgttgattgtca 43831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 2764483 - 2764557
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtc 137  Q
    |||| ||||||||||||||| || |||||||   ||| ||||||| | |||||| |||||| |||||||||||||    
T  2764483 tagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtc 2764557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 216
Target Start/End: Original strand, 7433234 - 7433380
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttc 169  Q
    |||||||||||||||| || ||||| ||   ||||||||| |||||||||||||| | ||||||| |   ||| || ||| ||||||||   |||||| |    
T  7433234 tcaacaacctctggtgctatgaagttaagtgtgtcaaatgcaaatggtataaaaatacgttgattttatgaacacattttctcatatttgatcactttgc 7433333  T
Q  170 ttgacccaactttagggactgcttgtcccaccgtaaaagccctgatc 216  Q
    ||||| | |||||   |||| | |||||||| ||||||||| |||||    
T  7433334 ttgacgcgactttgaagacttcctgtcccactgtaaaagccttgatc 7433380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 17307399 - 17307476
Alignment:
Q  53 aaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgtt 130  Q
    |||||||||||||| | ||||||| |||| ||| ||||||| | ||| | ||||||  |||| |||||||||||||||    
T  17307399 aaactctttttagaagatcaacaatctctagtgctaggaagcctaaattatcaaatacaaatagtataaaaacatgtt 17307476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 23993473 - 23993514
Alignment:
Q  96 aaaaatgtcaaatgtaaatggtataaaaacatgttgattgtc 137  Q
    ||||||||||||  ||||| ||||||||||||||||||||||    
T  23993473 aaaaatgtcaaaaataaatcgtataaaaacatgttgattgtc 23993514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 38731604 - 38731705
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| ||| |||||||||||||| || |||| ||||| | ||||| | |||| ||||||||  ||||||||||||| ||| | |||| |||    
T  38731604 aactctatgtagaaggttaacaacctctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtcagaacacgctttctca 38731703  T
Q  154 ta 155  Q
    ||    
T  38731704 ta 38731705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 294
Target Start/End: Complemental strand, 4413169 - 4412937
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| ||||||||| |||||||| ||||||  | ||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| |||| ||| |||    
T  4413169 tagaaggtcaacaatctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggcc 4413070  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    ||||| |||||| || ||||  ||  ||| ||||| || |||||||  ||||  ||| |  ||||||||||  ||||| |||||||||| ||||  ||||    
T  4413069 actttgcttgacacagcttttagggttgcctgtcctacggtaaaaggtctgacacttaatcccacaagtggtgaaaccccagtcaagtctacacaagcat 4412970  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | || ||||||||  |||||||||||||||    
T  4412969 gttttccacctacccatccgtacaccataacat 4412937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 10579719 - 10579639
Alignment:
Q  225 acaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacatttgttggccta 305  Q
    ||||||||  ||||| ||||||||||||||  ||||| | | ||||||||||| |||||||||||||||||||||||||||    
T  10579719 acaagtggtgaaaccccagtcaagtccacaaatgcatgttttcctcctacccactcgtacaccataacatttgttggccta 10579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 28225004 - 28225236
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagcc 162  Q
    |||| |||||||||||||||  | ||||||| | ||| ||||||| | ||||||||||||| |||||||||||||| ||  | |||| |||||||| | |    
T  28225004 tagaaggtcaacaacctctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtc 28225103  T
Q  163 acttttcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcat 261  Q
    ||||| |||||| || ||||      || |||||| |||||||||||||| | || | |  |||||||| |  ||||| || |||||||||||| |||||    
T  28225104 actttgcttgacgcagcttttaaagttgtttgtcctaccgtaaaagccctaactcctaagcccacaagtagtgaaaccccattcaagtccacacatgcat 28225203  T
Q  262 atgtccctcctacccagtcgtacaccataacat 294  Q
     | | ||||| |||||  |||||||||||||||    
T  28225204 gttttcctccaacccatccgtacaccataacat 28225236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 9685527 - 9685407
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||| ||| ||||| ||| ||| || |||||| ||||||| | ||||||||||||| |||||||||||||| ||| | |||| |||    
T  9685527 aactctatatagaaggtccacagcctctagtgctagaaaatcaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttttca 9685428  T
Q  154 tatttagccacttttcttgac 174  Q
    | ||| |||||||| ||||||    
T  9685427 tgtttggccactttgcttgac 9685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 34186170 - 34186055
Alignment:
Q  57 tctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatat 156  Q
    ||||| |||| |||||||||||||| ||| ||||||| ||||| | ||||||| ||||| |||||||| ||||||||||| | ||||   ||||||||||    
T  34186170 tctttgtagaaggtcaacaacctcttgtgttaggaagacaaaa-tatcaaatgcaaatgatataaaaatatgttgattgtgaaaacgtgttttgtcatat 34186072  T
Q  157 ttagccacttttcttga 173  Q
    ||  ||||||| |||||    
T  34186071 ttgaccactttgcttga 34186055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 5532431 - 5532567
Alignment:
Q  70 tcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttc 169  Q
    |||||||||| ||||| ||||||| | ||| ||||||| |||||| |||||||| |||||||||||||| ||| |  ||| |||| |||  ||||||| |    
T  5532431 tcaacaacctatggtgctaggaag-ctaaagtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacacgttttctcatgtttgaccactttgc 5532529  T
Q  170 ttgacccaactttagggactgcttgtcccaccgtaaaa 207  Q
    ||||| || ||||  || |||| ||||| |||||||||    
T  5532530 ttgacgcagcttttagggctgcatgtcctaccgtaaaa 5532567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 19161848 - 19161775
Alignment:
Q  101 tgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgac 174  Q
    ||||||| | |||||||||||||||||||||||||||| ||| | |||| |||| |||  ||||||||||||||    
T  19161848 tgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttttcatgtttgcccacttttcttgac 19161775  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 33612644 - 33612575
Alignment:
Q  69 gtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||||||||| |||| ||||||| ||||| ||||||||  |||| |||||||| ||||||||||||||    
T  33612644 gtcaacaacctccggtgttaggaagccaaaagtgtcaaatacaaattgtataaaatcatgttgattgtca 33612575  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 41868020 - 41867936
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| |||||||| ||||||||| ||||||  | ||| ||||||| | ||||||||||||| ||||||||||||||    
T  41868020 aactctatgtagaaggtcaacagcctctggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 41867936  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 2888520 - 2888595
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||| |||||||||||||| ||| ||||||| ||||| ||||| |    |||||||||||||||||||||||||||    
T  2888520 tagaaggtcaacaacctcttgtgttaggaagccaaaagtgtcataaacgaatggtataaaaacatgttgattgtca 2888595  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 44720335 - 44720406
Alignment:
Q  72 aacaacctctggtgataggaagtcaaaaa-tgtcaaatgtaaatggtataaaaacatgttgattgtcataac 142  Q
    |||||||||||||| |||||||  ||||| ||| ||||  ||| ||||||||||||||||||||||||||||    
T  44720335 aacaacctctggtgttaggaagcaaaaaaatgttaaattcaaacggtataaaaacatgttgattgtcataac 44720406  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 5404964 - 5404997
Alignment:
Q  95 caaaaatgtcaaatgtaaatggtataaaaacatg 128  Q
    ||||||||||||||||||||||||||||||||||    
T  5404964 caaaaatgtcaaatgtaaatggtataaaaacatg 5404997  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 294
Target Start/End: Complemental strand, 23484993 - 23484809
Alignment:
Q  111 aaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagcc 210  Q
    ||||||||||||| |||||||||||||| |||   |||| |||||||| ||||||||  |||||  | ||||  || ||  |||||||||||| |||| |    
T  23484993 aaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttttagggctagttgtcccaccgttaaaggc 23484894  T
Q  211 ctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataacat 294  Q
    | ||  ||| |  ||||||||||  ||||| || ||||||| |||| ||||| | | |||||||||||  |||||| ||||||||    
T  23484893 ccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacatcataacat 23484809  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 20142823 - 20142752
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcat 139  Q
    |||||||||||| || || ||| ||  ||||| ||||||| | ||||||||||||| |||||||||||||||    
T  20142823 ggtcaacaacctttgatgctagaaaaccaaaagtgtcaaaagaaaatggtataaaagcatgttgattgtcat 20142752  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 18744896 - 18744826
Alignment:
Q  223 ccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtccctcctacccagtcgtacaccataaca 293  Q
    ||||||||||  ||||| |||||||||| |||| ||||| | | |||||||||||  ||||||||||||||    
T  18744896 ccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataaca 18744826  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 2886670 - 2886630
Alignment:
Q  111 aaatggtataaaaacatgttgattgtcataacgcactttgt 151  Q
    ||||| |||||||||||||||||||||| ||| ||||||||    
T  2886670 aaatgatataaaaacatgttgattgtcagaacacactttgt 2886630  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 3968485 - 3968437
Alignment:
Q  90 gaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||||||||||||||| | |||| |||||||| ||| ||||||||||    
T  3968485 gaagtcaaaaatgtcaaacgcaaattgtataaaagcatattgattgtca 3968437  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 18745066 - 18744982
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| | |||| || ||||| ||| ||||| ||| || || ||||||||||| | |||||||||||||  |||||||||||||    
T  18745066 aactctatgtagaaggccaacagcctatggtgctagaaaatcgaaaatgtcaaaagcaaatggtataaaagtatgttgattgtca 18744982  T

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Target: scaffold0186 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 10363 - 10516
Alignment:
Q  62 ttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatg----ttgattgtcataacgcactttgtcatatt 157  Q
    ||||| |||||||||||||||||| ||||||| || || ||||||| | ||||||||||||| ||||    |||||||||| ||| | | || |||| ||    
T  10363 ttagaaggtcaacaacctctggtgctaggaagccacaagtgtcaaaagcaaatggtataaaagcatgttgattgattgtcagaacacgcattatcatgtt 10462  T
Q  158 tagccacttttcttgacccaactttagggactgcttgtcccaccgtaaaagccc 211  Q
    | |||| ||| |||||| |||||||  || |||||||||| || ||||||||||    
T  10463 tggccattttacttgacgcaacttttagggctgcttgtccaactgtaaaagccc 10516  T

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Target: scaffold0490 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 6329 - 6457
Alignment:
Q  54 aactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtca 153  Q
    |||||| | |||| |||||||| ||||||||| ||||||    ||| ||||||| | |||||||||| || |||||||||||||| ||| | |||| |||    
T  6329 aactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgctttctca 6428  T
Q  154 tatttagccacttttcttgacccaacttt 182  Q
    | ||| |||||||| |||||| |||||||    
T  6429 tgtttggccactttacttgacgcaacttt 6457  T

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Target: scaffold1768 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 282 - 55
Alignment:
Q  68 ggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 167  Q
    |||||||||||| ||||  ||| ||  ||||| |||||||   ||||||||||||| ||||||||| |||||||| |||| | |||| ||| ||||||||    
T  282 ggtcaacaacctttggtactagaaaaccaaaagtgtcaaacacaaatggtataaaagcatgttgatggtcataacccactgtctcatgtttggccacttt 183  T
Q  168 tcttgacccaactttagggactgcttgtcccaccgtaaaagccctga-tcttcaatccacaagtggaaaaacctcagtcaagtccacacgtgcatatgtc 266  Q
     |||||| ||  |||  || |||| ||||| || ||||||| || ||  ||| |  ||||||||||  ||||| |||||||||| | || ||||| | |     
T  182 gcttgacgcagtttttagggctgcctgtcctacagtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtctatacatgcatgtttt 83  T
Q  267 cctcctacccagtcgtacaccataacat 294  Q
    |||||||||||  |||||| ||||||||    
T  82 cctcctacccatccgtacatcataacat 55  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 103110 - 103185
Alignment:
Q  63 tagatggtcaacaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||| |||||||| ||||||||| ||||||  | ||| ||||||| | ||||||||||||| ||||||||||||||    
T  103110 tagaaggtcaacagcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 103185  T

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Target: scaffold0493 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 8609 - 8544
Alignment:
Q  73 acaacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    ||||||||| ||| ||||||  ||||| ||| ||| | ||||||||||||||||||||||||||||    
T  8609 acaacctctagtgctaggaaaccaaaagtgttaaacgcaaatggtataaaaacatgttgattgtca 8544  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 49426 - 49490
Alignment:
Q  74 caacctctggtgataggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtca 138  Q
    |||||| ||||| || |||||| ||| ||||||| | ||||||||||||| || |||||||||||    
T  49426 caacctttggtgttaagaagtcgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtca 49490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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