View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19168_low_2 (Length: 726)

Name: NF19168_low_2
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19168_low_2
NF19168_low_2
[»] chr3 (8 HSPs)
chr3 (19-355)||(564506-564842)
chr3 (19-355)||(531925-532261)
chr3 (548-721)||(531079-531252)
chr3 (548-721)||(564034-564207)
chr3 (353-492)||(564263-564402)
chr3 (409-488)||(531312-531391)
chr3 (353-408)||(531732-531787)
chr3 (39-80)||(22746674-22746716)
[»] chr7 (3 HSPs)
chr7 (394-486)||(34955422-34955514)
chr7 (411-488)||(3756679-3756757)
chr7 (577-666)||(32471249-32471336)
[»] chr8 (1 HSPs)
chr8 (549-649)||(32848033-32848131)
[»] chr5 (1 HSPs)
chr5 (549-664)||(34272289-34272402)
[»] chr1 (1 HSPs)
chr1 (553-629)||(49138139-49138212)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 564842 - 564506
Alignment:
Q  19 atgcaatcagagacttaggaataattggcaaactccgtgatcaaatcttgtgtgttctttgtgtgcannnnnnnnnnnnnnnnnnnnnnnnnaactagat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||                         ||||||||    
T  564842 atgcaatcagagacttaggaataattggcaaactccgtgatcaaatctcgtgtgttctttgtttgcatttttgtagttttatttttctttttaactagat 564743  T
Q  119 ctgttgttctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatatgtaagtctaagcttga 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  564742 ctgttgttctaatagcattggtgaagaactaaactgatgatagaaatatttcctgtaacaaactgatagaaactaatttaatatgtaagtctaagcttga 564643  T
Q  219 ataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattcttgacaaagctgctcc 318  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  564642 ataattgaagaactaaattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattcttgacaaagctgctcc 564543  T
Q  319 taaaactttgaagttttgtaaaagtaatcatttgata 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  564542 taaaactttgaagttttgtaaaagtaatcatttgata 564506  T

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Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 532261 - 531925
Alignment:
Q  19 atgcaatcagagacttaggaataattggcaaactccgtgatcaaatcttgtgtgttctttgtgtgcannnnnnnnnnnnnnnnnnnnnnnnnaactagat 118  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||                         |||||| |    
T  532261 atgcactcagagacttaggaataattggcaaactccttgatcaaatcttgtgtgttctttgtttgcatttttgtagttttttttttctttttaactaggt 532162  T
Q  119 ctgttgttctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatatgtaagtctaagcttga 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  532161 ctgttgttctaatagcattgttgaagaactaaactgatcatagaattatttcatgtaacaaactgatagaaactgatttaatatgtaagtctaagattga 532062  T
Q  219 ataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattcttgacaaagctgctcc 318  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  532061 ataattgaagaactaaattgtgaaagaaagaaggtgcgtcgttcttaatagagtctatagtgaaagcaagaagcagactcattcttgacaaagctgctcc 531962  T
Q  319 taaaactttgaagttttgtaaaagtaatcatttgata 355  Q
    |||||||| ||||||||||||||||||||||||||||    
T  531961 taaaacttcgaagttttgtaaaagtaatcatttgata 531925  T

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Target: chr3; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 548 - 721
Target Start/End: Complemental strand, 531252 - 531079
Alignment:
Q  548 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  531252 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat 531153  T
Q  648 ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcttctctg 721  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  531152 ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttctg 531079  T

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Target: chr3; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 548 - 721
Target Start/End: Complemental strand, 564207 - 564034
Alignment:
Q  548 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  564207 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat 564108  T
Q  648 ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcttctctg 721  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  564107 ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttctg 564034  T

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Target: chr3; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 353 - 492
Target Start/End: Complemental strand, 564402 - 564263
Alignment:
Q  353 atatcctaatcaataatccaattgtctgtaagagttcccacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaattt 452  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  564402 atatcctaatcaataatccaattgtctgtaagagttacaacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaattt 564303  T
Q  453 gtatatgagaacccaattagatttggtgttcttagtgcat 492  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  564302 gtatatgagaacccaattagatttggtgttcttagtgcat 564263  T

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Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 531391 - 531312
Alignment:
Q  409 aaatggataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttcttagt 488  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  531391 aaatggatgattgcaaattaattattgaatgaaatataaaatttgtatatgacaacccaattagatttggtgtccttagt 531312  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 531787 - 531732
Alignment:
Q  353 atatcctaatcaataatccaattgtctgtaagagttcccacaattgacaatgtaac 408  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  531787 atatcctagtcaataatcgaattgtcagtaagagttcccacaattgacaatgtaac 531732  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 22746716 - 22746674
Alignment:
Q  39 ataattgg-caaactccgtgatcaaatcttgtgtgttctttgt 80  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  22746716 ataattggtcaaactccgtgatcaaatcttgtgtgttatttgt 22746674  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 486
Target Start/End: Original strand, 34955422 - 34955514
Alignment:
Q  394 aattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttctta 486  Q
    ||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||||||    
T  34955422 aattggcaatgtaactagtagataattgcaaattaattattgaatgaaatataaaatttataaataagaactcaattggatttggtgttctta 34955514  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 3756679 - 3756757
Alignment:
Q  411 atggataattgcaaattaattattgaatgaaatataaaatttg-tatatgagaacccaattagatttggtgttcttagt 488  Q
    ||||||||||||||||| |||||| ||| |||  ||||| ||| || |||||||  |||||||| ||||||||||||||    
T  3756679 atggataattgcaaattgattattaaattaaaggtaaaaattgatagatgagaattcaattagagttggtgttcttagt 3756757  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 666
Target Start/End: Original strand, 32471249 - 32471336
Alignment:
Q  577 gatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatttgccaaaaccaattatat 666  Q
    |||||||||||  |||| | |||||||| |||||||||||||| ||||||||||  || |  ||||||||||||||  ||||||| ||||    
T  32471249 gatcatcattt--ctctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatat 32471336  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 549 - 649
Target Start/End: Original strand, 32848033 - 32848131
Alignment:
Q  549 ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt 648  Q
    ||||||||||||||| ||||||||||| |||||||||||  |||| | |||||||| ||||| |||||||| |||||||||| | |||| ||||| ||||    
T  32848033 ttcatcaattttcttgatacccattattgatcatcattt--ctctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatt 32848130  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 549 - 664
Target Start/End: Complemental strand, 34272402 - 34272289
Alignment:
Q  549 ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt 648  Q
    |||||||||||||||||||||||||||   | |||||||| || |||||  ||||| || |||| |||||| ||||||||||  ||| | ||||||||||    
T  34272402 ttcatcaattttcttcatacccattattatttatcatttttctatttat--gcacaatctaagcatccttgattttaggatcactagtcacatgtccatt 34272305  T
Q  649 tgccaaaaccaattat 664  Q
    | || |||||||||||    
T  34272304 tacctaaaccaattat 34272289  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 629
Target Start/End: Complemental strand, 49138212 - 49138139
Alignment:
Q  553 tcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggat 629  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||  |||| ||| |||||||||||||  |||||||||    
T  49138212 tcaattttcttcatacccattattgat-atcattttcctatt--tatgtacaatccaagcttcctttattttaggat 49138139  T

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