View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_low_32 (Length: 248)
Name: NF19168_low_32
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 35094334 - 35094113
Alignment:
| Q |
17 |
atgaacaatgttaataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaa |
116 |
Q |
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| T |
35094334 |
atgaacaatgttaataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaa |
35094235 |
T |
|
| Q |
117 |
gagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcatag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35094234 |
gagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcagag |
35094135 |
T |
|
| Q |
217 |
aatataagtttaatattcttcg |
238 |
Q |
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||||||||||||||||| |||| |
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| T |
35094134 |
aatataagtttaatatttttcg |
35094113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 32863427 - 32863466
Alignment:
| Q |
183 |
ttttcattttcacttcaactaataaacatcatagaatata |
222 |
Q |
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| T |
32863427 |
ttttcatttttacttcaactaataaacatgatagaatata |
32863466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 14390477 - 14390526
Alignment:
| Q |
184 |
tttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
233 |
Q |
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| T |
14390477 |
tttcattttcacttcaactaaaaaacatgatacaatataaattcaatatt |
14390526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 47364879 - 47364829
Alignment:
| Q |
183 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
233 |
Q |
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||||||||||||||||||||||||||||| | |||| |||| ||||||||| |
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| T |
47364879 |
ttttcattttcacttcaactaataaacataaaagaaaataaatttaatatt |
47364829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
| Q |
183 |
ttttcattttcacttcaactaataaacatcatagaatat |
221 |
Q |
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||||||||||||||||||||||||||||| | ||||||| |
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| T |
13806182 |
ttttcattttcacttcaactaataaacataagagaatat |
13806144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
| Q |
180 |
gtattttcattttcacttcaactaataaacatcatagaatata |
222 |
Q |
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||||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
10195349 |
gtattttcattttcacttcaactaatagacatgataaaatata |
10195391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 43537569 - 43537619
Alignment:
| Q |
183 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
233 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
43537569 |
ttttcattttcacttcaactaataaacataggagaatatagatttaatatt |
43537619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 42509285 - 42509430
Alignment:
| Q |
37 |
agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc |
136 |
Q |
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||||||||||||||| |||||||| | ||||||||||| ||||| ||| | ||||||| || |||||||| || | || ||| ||||| || || | |
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| T |
42509285 |
agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt |
42509384 |
T |
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| Q |
137 |
accgactttgttcccaatggaagcttggccgttcgccttcacggta |
182 |
Q |
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||||||||||||| || || ||| | || ||||||||||| |||| |
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| T |
42509385 |
accgactttgttcagaacggtagcctagctgttcgccttcatggta |
42509430 |
T |
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