View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_low_35 (Length: 221)
Name: NF19168_low_35
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 31333471 - 31333666
Alignment:
| Q |
1 |
tattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttgtgtcctccttattgaagttctctttggt |
100 |
Q |
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| T |
31333471 |
tattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttatgtcctacttattgaagttctctttggt |
31333570 |
T |
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| Q |
101 |
agcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaccatctttatttat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31333571 |
agcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaacatctttatttat |
31333666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 31340201 - 31340396
Alignment:
| Q |
1 |
tattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttgtgtcctccttattgaagttctctttggt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
31340201 |
tattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttatgtcctacttattgaagttctctttggt |
31340300 |
T |
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| Q |
101 |
agcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaccatctttatttat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31340301 |
agcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaacatctttatttat |
31340396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 45245523 - 45245572
Alignment:
| Q |
128 |
acttttctttgtagttacttttctgaatatataaaatcaataaaatctct |
177 |
Q |
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| T |
45245523 |
acttttctctgctgttacttttctgaatatataaaatcaatagaatctct |
45245572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 644489 - 644374
Alignment:
| Q |
1 |
tattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttgtgtcctccttattgaagttctctttggt |
100 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| |
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| T |
644489 |
tattgattgtggagtgcattgcattgcttgttgtcgctttgccatgacttatattacttgaacaaattcttgtttcctacttatttaagttctctttggt |
644390 |
T |
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| Q |
101 |
agcatgggttttgcat |
116 |
Q |
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|||||||||||||||| |
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| T |
644389 |
agcatgggttttgcat |
644374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 644356 - 644267
Alignment:
| Q |
107 |
ggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaccatctttatttat |
196 |
Q |
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|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
644356 |
ggttttgcatatttgtagcatacttttccttatagttacttttctgaatatataaaatcaataaaatctctgtaaaaaatctttatttat |
644267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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