View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_low_36 (Length: 217)
Name: NF19168_low_36
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 35094301 - 35094113
Alignment:
| Q |
19 |
cacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttc |
118 |
Q |
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| T |
35094301 |
cacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttc |
35094202 |
T |
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| Q |
119 |
ccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcatagaatataagtttaatattcttcg |
207 |
Q |
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| T |
35094201 |
ccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcagagaatataagtttaatatttttcg |
35094113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 32863427 - 32863466
Alignment:
| Q |
152 |
ttttcattttcacttcaactaataaacatcatagaatata |
191 |
Q |
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| T |
32863427 |
ttttcatttttacttcaactaataaacatgatagaatata |
32863466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 14390477 - 14390526
Alignment:
| Q |
153 |
tttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
202 |
Q |
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| T |
14390477 |
tttcattttcacttcaactaaaaaacatgatacaatataaattcaatatt |
14390526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 47364879 - 47364829
Alignment:
| Q |
152 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
202 |
Q |
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||||||||||||||||||||||||||||| | |||| |||| ||||||||| |
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| T |
47364879 |
ttttcattttcacttcaactaataaacataaaagaaaataaatttaatatt |
47364829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
| Q |
152 |
ttttcattttcacttcaactaataaacatcatagaatat |
190 |
Q |
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||||||||||||||||||||||||||||| | ||||||| |
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| T |
13806182 |
ttttcattttcacttcaactaataaacataagagaatat |
13806144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
| Q |
149 |
gtattttcattttcacttcaactaataaacatcatagaatata |
191 |
Q |
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| T |
10195349 |
gtattttcattttcacttcaactaatagacatgataaaatata |
10195391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 43537569 - 43537619
Alignment:
| Q |
152 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
202 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
43537569 |
ttttcattttcacttcaactaataaacataggagaatatagatttaatatt |
43537619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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