View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19168_low_6 (Length: 450)
Name: NF19168_low_6
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 31838528 - 31838092
Alignment:
| Q |
13 |
aagaatatgtgcttgaagatgttgaggctatttttggattgcatttagcgtcactgtatcccttaggtgttgttgcgtcgtgtccgggtgaatttttagc |
112 |
Q |
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| T |
31838528 |
aagaaaatgtgcttgaagatgttgaggctatttttggattgcatttagcgtcactgtatcccttaggtgttgttgcgtcgcgtccgggtgaatttttagc |
31838429 |
T |
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| Q |
113 |
aggatatggaagcttcaaagcgaagatcaaagggggtttagcaggaactccgcagcgttgtcttgatccaattttggctgcttcggcatccgtgattagc |
212 |
Q |
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| T |
31838428 |
aggatatggaagcttcaaagcgaagatcaaagggggtttagcaggaactccgcagcgttgtcttgatccaattttggctgcttcggcatccgtgattagc |
31838329 |
T |
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| Q |
213 |
ttgcaaaacattatttcaagggaggtggatcctttagactcgcaggtggagtcaaacactgaaattcaattacaaaaagaaaacttacaagataaaagtt |
312 |
Q |
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| T |
31838328 |
ttgcaaaacattatttcaagggaggtggatcctttagactcgcaggtggagtcaaacactgaaattcaattacaaaaag-aaacttacaagataaaagtt |
31838230 |
T |
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| Q |
313 |
ttaacacattaattcttatgattgattctgtttgtggcttgagtgttgtataaaaagttaatatataaagcttaattttgcaggtgctttctgtggcaat |
412 |
Q |
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| T |
31838229 |
ttaacacattaattcttatgattgattctgtttgtggcttgagtgttgtataagaagttaatatataaagcttaattttgcaggtgctttctgtggcaat |
31838130 |
T |
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| Q |
413 |
gatccaatcagagtctgggcatgaactcccccctgatt |
450 |
Q |
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| T |
31838129 |
gatccaatcagagtctggtcatgaactcacccctgatt |
31838092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 26264593 - 26264857
Alignment:
| Q |
13 |
aagaatatgtgcttgaagatgttgaggctatttttggattgcatttagcgtcactgtatcccttaggtgttgttgcgtcgtgtccgggtgaatttttagc |
112 |
Q |
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| T |
26264593 |
aagaaaatgtgcttgaagatgtagaggctattttcggattgcatttagcgacacagtatcccttaggtgttgttgcatcacgaccgggggattttttagc |
26264692 |
T |
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| Q |
113 |
aggatatggaagcttcaaagcgaagatcaaagggggtttagcaggaactccgcagcgttgtcttgatccaattttggctgcttcggcatccgtgattagc |
212 |
Q |
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| T |
26264693 |
aggatgtggaagcttcaaagcaaagatcaaagggggtttagcggaaattccgcagcattgtcttgatcctgttttggccgcttcaatgtcggtgattagc |
26264792 |
T |
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| Q |
213 |
ttgcaaaacattatttcaagggaggtggatcctttagactcgcaggtggagtcaaacactgaaat |
277 |
Q |
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| T |
26264793 |
ttgcaaaacattgtttcaagggaggtggatcctttagattcccaggttgagtcaaacactaaaat |
26264857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 26264869 - 26264989
Alignment:
| Q |
308 |
aagttttaacacattaattcttatgattgattctgtttgtggcttgagtgttgtataaaaagttaatatataaagcttaattttgcaggtgctttctgtg |
407 |
Q |
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||||||| |||||||| ||||||||| | ||| |||||||| ||||||| |||| ||| | ||| |||| ||||| | || ||||||| |||||||| |
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| T |
26264869 |
aagttttcacacattatttcttatgagtcattatgtttgtgatttgagtgctgtaaaaatatttac-atatgaagctaagttctgcaggtagtttctgtg |
26264967 |
T |
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| Q |
408 |
gcaatgatccaatcagagtctg |
429 |
Q |
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| T |
26264968 |
gcaatggtacattcagagtctg |
26264989 |
T |
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