View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19168_low_7 (Length: 449)
Name: NF19168_low_7
Description: NF19168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19168_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Original strand, 19712046 - 19712465
Alignment:
| Q |
12 |
agagagtaccaactaaataaaacagaaaataatagataaataaatggcacactactaaggagaaaacaacaacgtcaaacattcttattaataacannnn |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19712046 |
agagagtaccaactaaataaaacagaaaataatagagaaataaatggcacactactaaggagaaaacaacaacgtcaaacattcttattaataacatttt |
19712145 |
T |
|
| Q |
112 |
nnnnnnnnnnnaacaaaattagaaatcaaagccaacacaaacattttaataaggaaaaatacataaaaattgtctaacaccatatatcctcataatgtct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19712146 |
tttttttt---aacaaaattagaaatcaaagccaacacaaacattttaataaggaaaaatacataaaaattgtctaacaccatatatcctcataatgtct |
19712242 |
T |
|
| Q |
212 |
attttaattcaagatcatcaatcacaactttcactcattcagcaaaaattcactgcacaaatatactacaatcaacttatcaggtcaaaatatcaattaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19712243 |
attttaattcaagatcatcaatcacaactttcactcattcagcaaaaattcactgcacacatatactacaatcaacttatcaggtcaaaatatcaattaa |
19712342 |
T |
|
| Q |
312 |
tgtagtcaagacatactcttttatcacaatactaaaatcatttcagcgattactcaacatgtctcatgtatgataagaagaaatcaaccaataaaataat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19712343 |
tgtagtcaagacatactcttttatcacaatactaaaatcatttcagcgattactcaacatgtctcatgtatgataagaagaaatcaaccaataaaataat |
19712442 |
T |
|
| Q |
412 |
tattaagtacaagattaactagt |
434 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19712443 |
tattaagtacaagattaactagt |
19712465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University