View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19169_high_1 (Length: 578)

Name: NF19169_high_1
Description: NF19169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19169_high_1
NF19169_high_1
[»] chr6 (5 HSPs)
chr6 (18-571)||(11297147-11297704)
chr6 (82-216)||(11292093-11292227)
chr6 (265-549)||(24894206-24894492)
chr6 (265-412)||(35232983-35233130)
chr6 (345-406)||(13599161-13599222)
[»] chr1 (7 HSPs)
chr1 (265-563)||(5193407-5193707)
chr1 (281-544)||(50236937-50237202)
chr1 (317-556)||(43297907-43298148)
chr1 (365-571)||(31325297-31325505)
chr1 (317-535)||(1524516-1524736)
chr1 (284-406)||(23464853-23464975)
chr1 (461-535)||(1524191-1524265)
[»] chr2 (7 HSPs)
chr2 (272-558)||(572693-572981)
chr2 (265-571)||(40327672-40327980)
chr2 (265-562)||(35135573-35135872)
chr2 (266-571)||(19264911-19265218)
chr2 (272-366)||(16321950-16322044)
chr2 (471-571)||(26791023-26791123)
chr2 (290-402)||(39012049-39012161)
[»] chr7 (4 HSPs)
chr7 (265-556)||(23208229-23208522)
chr7 (82-188)||(30909041-30909147)
chr7 (277-406)||(16770476-16770605)
chr7 (26-84)||(30909188-30909246)
[»] chr3 (3 HSPs)
chr3 (269-571)||(38647527-38647831)
chr3 (377-549)||(23424107-23424281)
chr3 (290-402)||(3660131-3660243)
[»] chr5 (4 HSPs)
chr5 (265-452)||(7813321-7813510)
chr5 (317-406)||(23944564-23944653)
chr5 (486-566)||(23944735-23944815)
chr5 (478-571)||(7816844-7816937)
[»] chr4 (2 HSPs)
chr4 (269-571)||(54477753-54478057)
chr4 (507-566)||(33803716-33803775)
[»] scaffold0036 (1 HSPs)
scaffold0036 (326-384)||(75467-75525)


Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 11297704 - 11297147
Alignment:
Q  18 aacattagcattaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgattttgacaatttaggttgacgtaactcgtatgcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11297704 aacattagcattaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgattttggcaatttaggttgacgtaactcgtatgcta 11297605  T
Q  118 tattactagttggagtttgttcttagaagtgttgatttgtgatttataaatgaatctgttatcattaatttgtcgagtttgacacattacgttaaccgag 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  11297604 tattactagttggagtttgttctt-gaagtgttgatttgtgatttataaatgaatctgttatcattaatttgtcgagtttgatacattacgctaaccgag 11297506  T
Q  218 agttattatagatgattttgcacgtacgttaaccaaggtnnnnnnnn----tgaagtgtttgatgccc-tcaactctatgaaaccttagaaagccctatg 312  Q
    ||||||||||||| |||||||||||||||||||||||||            ||||||||| | ||||| |||||||||||||||||||||||||   |||    
T  11297505 agttattatagataattttgcacgtacgttaaccaaggtaaaaaaaaaaaatgaagtgttcgctgcccctcaactctatgaaaccttagaaagcttcatg 11297406  T
Q  313 acccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggttatttt 412  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  11297405 acccaatggctttcattgcattttcttcaagcaatattgacacgttgttagtgatgatatatttcatatggttcattcagcatttcaaacaggttatttt 11297306  T
Q  413 tagccggacatctcaaacaatcattgcactcattcaaaaaattgatcttcctagcacatataaatattttagacccatcagtctctccaacataatctac 512  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||| ||||||||||||||||||||| |||||||||||||    
T  11297305 tagccggacatctcaaacaatcattgcactcattccaaaaattgatcctcctagtacatacaaagattttagacccatcagtctctgcaacataatctac 11297206  T
Q  513 aaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatattcttgg 571  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  11297205 aaaattatcacaaaagttttggtgcatcgtctcagacctattcttactaatattattgg 11297147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 11292227 - 11292093
Alignment:
Q  82 attttgacaatttaggttgacgtaactcgtatgctatattactagttggagtttgttcttagaagtgttgatttgtgatttataaatgaatctgttatca 181  Q
    |||||| |||||| | |||||||||||| || ||||| |||||||||||||||||||||| |||||||| | ||||||||||||| ||||| ||||| ||    
T  11292227 attttggcaatttggattgacgtaactcctaggctatcttactagttggagtttgttctt-gaagtgttaaattgtgatttataattgaatttgttaaca 11292129  T
Q  182 ttaa-tttgtcgagtttgacacattacgttaaccga 216  Q
    |||| ||||| |||||||| |||||||  |||||||    
T  11292128 ttaattttgttgagtttgagacattacactaaccga 11292093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 549
Target Start/End: Complemental strand, 24894492 - 24894206
Alignment:
Q  265 tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt 364  Q
    |||||| ||||  ||||||||||| |||||||| || |||||||   |  | ||||| || ||||| || || |||||  ||||||| || || ||| |     
T  24894492 tgaagtttttgtcgccctcaactccatgaaaccatacaaagcccctggctcggatggattccattgtatctttttcaaacaatattggcatatagttgga 24894393  T
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttc 462  Q
    ||||| || || |||||||| ||| |||||||||| |||||| | ||| | ||||| || ||||||| ||  |||||||||||||  ||||| || |  |    
T  24894392 gatgacatcttccatatggtccatacagccttccacacaggtcactttgatccggagatttcaaacactctcattgcactcattccgaaaatcgaccccc 24894293  T
Q  463 ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagac 549  Q
    | | ||| |  ||| ||||||||||||||||||| | ||||||||||||||| |||||| | |||||| | ||||||||||||||||    
T  24894292 ccaccactttcaaagattttagacccatcagtctatgcaacataatctacaagattatccctaaagttcttgtgcatcgtctcagac 24894206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 412
Target Start/End: Original strand, 35232983 - 35233130
Alignment:
Q  265 tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt 364  Q
    |||||| |||| |||||| ||||| |||||||| || ||||| | | |||| ||||| || |||||||| ||||||||| ||||||| || ||| || |     
T  35232983 tgaagtctttgctgccctaaactccatgaaaccctacaaagctccaggaccagatggtttccattgcatattcttcaagcaatattggcatattattgga 35233082  T
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttt 412  Q
    |||||||||||  || | ||| |  ||||||||||||| ||| |||||    
T  35233083 gatgatattttctatctagttaaaacagccttccaaaccggtgatttt 35233130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 13599161 - 13599222
Alignment:
Q  345 aatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggt 406  Q
    ||||||| |||||| || | |||||||||| ||||||||| || ||||||||||||| ||||    
T  13599161 aatattggcacattattggggatgatatttctcatatggtgcagtcagccttccaaaaaggt 13599222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 265 - 563
Target Start/End: Complemental strand, 5193707 - 5193407
Alignment:
Q  265 tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt 364  Q
    ||||||||||| |||||| || || |||||||| || ||||| |     ||||||| ||| |||||||| ||||| ||  ||||||| ||||| ||| |     
T  5193707 tgaagtgtttgctgcccttaattccatgaaaccatacaaagcacccgaccccgatgacttccattgcatcttctttaaacaatattggcacatagttgga 5193608  T
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttc 462  Q
    |||||| ||||||| |||||  |||||||||||||||||||| | ||| | ||||| ||||||| || ||  ||||||||||||| ||||||||||   |    
T  5193607 gatgatgtttttcacatggtctattcagccttccaaacaggtcactttgatccggagatctcaagcactctcattgcactcattccaaaaattgattcac 5193508  T
Q  463 ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa 562  Q
      | ||| || ||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||| |||    
T  5193507 tcaacacttacaaagattttagacccatcagcctctgcaacataatctacaagattatcacaaaagttcttgtgcatcgtctcagacctattcttaataa 5193408  T
Q  563 t 563  Q
    |    
T  5193407 t 5193407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 281 - 544
Target Start/End: Complemental strand, 50237202 - 50236937
Alignment:
Q  281 ctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcata 380  Q
    |||||||| ||||||||||| ||||| |   |||| |||||||| |||||||||||||||||  ||||||| ||||||||| ||||||| ||||| |||     
T  50237202 ctcaactcaatgaaaccttacaaagcacctggaccagatggcttccattgcattttcttcaaacaatattggcacattgttggtgatgacattttacatt 50237103  T
Q  381 tggttcattcagccttccaaacaggttatttttagccggacatctcaa--acaatcattgcactcattcaaaaaattgatcttcctagcacatataaata 478  Q
    |||| || ||||||||||  |||||| ||||| | || || |||||||  ||| |||||||||||||||  ||||||||||| ||   ||| || ||| |    
T  50237102 tggtacactcagccttcctcacaggtcattttgatccagagatctcaaacacactcattgcactcattcctaaaattgatctgcccgccacctacaaaga 50237003  T
Q  479 ttttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtct 544  Q
     |||||  | ||||| || |  |||||  ||||||| |||||||| ||||||||||||||||||||    
T  50237002 ctttaggtctatcagcctttgtaacattgtctacaagattatcactaaagttttggtgcatcgtct 50236937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 556
Target Start/End: Original strand, 43297907 - 43298148
Alignment:
Q  317 gatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggttatttttagc 416  Q
    |||||||| |||||||| ||||||||  ||||||| ||||| ||| | |||||| ||||||| ||||| || ||||||||||||| |||| ||||| | |    
T  43297907 gatggcttccattgcatcttcttcaaacaatattggcacatagttggagatgatgtttttcacatggtccactcagccttccaaataggtcattttgatc 43298006  T
Q  417 cggacatctcaa--acaatcattgcactcattcaaaaaattgatcttcctagcacatataaatattttagacccatcagtctctccaacataatctacaa 514  Q
     ||| || ||||  ||  |||||||||||||||  |||||||||   || | ||| || ||| ||||||| ||||||||||||| |||||||||||| ||    
T  43298007 tggagatttcaagcactctcattgcactcattcctaaaattgattcacccaacacttacaaagattttaggcccatcagtctctgcaacataatctataa 43298106  T
Q  515 aattatcacaaaagttttggtgcatcgtctcagacatattct 556  Q
     ||||| ||||||||| | |||||  ||||||||| ||||||    
T  43298107 gattattacaaaagttcttgtgcactgtctcagacctattct 43298148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 571
Target Start/End: Complemental strand, 31325505 - 31325297
Alignment:
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttc 462  Q
    |||||||||||||||||||| || ||||| || || || ||| | ||| | ||||| |||||||| | ||  ||||||||||||| ||||||||||   |    
T  31325505 gatgatatttttcatatggtccactcagcttttcacactggtcactttgatccggagatctcaaaaactcttattgcactcattccaaaaattgattccc 31325406  T
Q  463 ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa 562  Q
    ||| |||||| ||| |||||| ||| |||||||| |  |||||||||||||| || || ||||||||| | ||||| || ||||| | |||||| | |||    
T  31325405 ctaacacatacaaagattttaaacctatcagtctttgtaacataatctacaagatcattacaaaagttcttgtgcaccgcctcaggcctattctcaataa 31325306  T
Q  563 tattcttgg 571  Q
    |||| ||||    
T  31325305 tattattgg 31325297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 535
Target Start/End: Original strand, 1524516 - 1524736
Alignment:
Q  317 gatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggttatttttagc 416  Q
    ||||| ||||| ||||| ||||||||| |||| || || || ||| | ||||| ||||||||  |||| ||||||||||| ||||  ||| ||||| | |    
T  1524516 gatggttttcaatgcatcttcttcaagaaatactggcatatagttggagatgacatttttcacttggtacattcagcctttcaaaatggtcattttgatc 1524615  T
Q  417 cggacatctcaaacaatc--attgcactcattcaaaaaattgatcttcctagcacatataaatattttagacccatcagtctctccaacataatctacaa 514  Q
    |||| || ||||| | ||  |||||||||||||  || |||||   ||||| ||  || ||| ||||||||||||||||| | | ||||||  | || ||    
T  1524616 cggagatttcaaatactctcattgcactcattcccaagattgacactcctaacatttacaaagattttagacccatcagtatgtgcaacattgtttataa 1524715  T
Q  515 aattatcacaaaagttttggt 535  Q
    ||||||||| |||||||||||    
T  1524716 aattatcaccaaagttttggt 1524736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 23464853 - 23464975
Alignment:
Q  284 aactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatgg 383  Q
    ||||||||||||||||| ||||| | | |||| |||||||| || |||||||| |||||  |||| || ||||||  | | |||||||||||  ||||||    
T  23464853 aactctatgaaaccttacaaagcaccaggaccagatggcttccaatgcatttttttcaaacaatactggcacattactggagatgatattttcaatatgg 23464952  T
Q  384 ttcattcagccttccaaacaggt 406  Q
    | ||||  || ||||||||||||    
T  23464953 tgcatttggctttccaaacaggt 23464975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 535
Target Start/End: Original strand, 1524191 - 1524265
Alignment:
Q  461 tcctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggt 535  Q
    ||||| ||| || ||| ||||||||||||||||||| | ||||||  | || ||||||||||| |||||||||||    
T  1524191 tcctaacacttacaaagattttagacccatcagtctgtgcaacattgtttataaaattatcaccaaagttttggt 1524265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 272 - 558
Target Start/End: Original strand, 572693 - 572981
Alignment:
Q  272 tttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgata 371  Q
    |||| |||||| ||||| |||||||| || ||||| |   | || |||||||| |||||||| ||||||||  ||||||| ||||| ||| | ||||| |    
T  572693 tttgttgcccttaactccatgaaaccctacaaagcacccgggccagatggcttccattgcatcttcttcaaacaatattggcacatagttggagatgaca 572792  T
Q  372 tttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttcctagcac 469  Q
    | || ||||||||||| ||||| ||||  |||||||||||| | | ||| |||||| ||| ||  ||||||||||||| ||||||||||  ||| | |||    
T  572793 tcttccatatggttcaatcagctttcctcacaggttattttgatctggagatctcatacactcttattgcactcattccaaaaattgattctcccatcac 572892  T
Q  470 atataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattctta 558  Q
     || ||| |||||||||||||||| |||| ||| |  |||||||| || |||||||||||| | ||||||||||| |||| ||||||||    
T  572893 ttacaaagattttagacccatcagcctctgcaatacgatctacaatatcatcacaaaagttcttgtgcatcgtcttagacctattctta 572981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 571
Target Start/End: Original strand, 40327672 - 40327980
Alignment:
Q  265 tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt 364  Q
    ||||||||| | ||||| |||||||||||| ||||| |||||||   | || || || ||||||||||||||||||||  |||| || ||||||||  |     
T  40327672 tgaagtgttcgctgcccacaactctatgaagccttacaaagcccctggtcctgacgggtttcattgcattttcttcaaacaatactggcacattgtcgga 40327771  T
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttc 462  Q
    |||||||||||  | ||||| ||| |||||| ||| |  ||||| ||| | ||||| ||||||||||   ||||||| ||||||| ||||||||| |  |    
T  40327772 gatgatattttcaaaatggtccatgcagcctaccatagtggttactttgatccggagatctcaaacactctcattgcgctcattccaaaaattgaaccac 40327871  T
Q  463 ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa 562  Q
    | |  || || ||| |||| |||||||| || || | |||||| || ||||||||||||||||| || ||||| ||||| || || | |||||| |||||    
T  40327872 ccactacttacaaagatttcagacccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaa 40327971  T
Q  563 tattcttgg 571  Q
     ||| ||||    
T  40327972 cattattgg 40327980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 265 - 562
Target Start/End: Complemental strand, 35135872 - 35135573
Alignment:
Q  265 tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt 364  Q
    ||||||||| | |||||||||||||||||| || || |||||||   | || || || ||||||||||||||||||||| |||| || ||||||||  |     
T  35135872 tgaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgacgggtttcattgcattttcttcaagcaatactggcacattgtcgga 35135773  T
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttc 462  Q
    |||||||||||  | ||||| ||| |||| | ||| |  ||||| ||| | ||||| ||||||||||   ||||||| ||||||| ||||||||| |  |    
T  35135772 gatgatattttcaaaatggtccatgcagcttaccatagtggttactttgatccggagatctcaaacactctcattgcgctcattccaaaaattgaaccac 35135673  T
Q  463 ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa 562  Q
    | |  || || ||| |||| | |||||| || || | |||||| || ||||||||||||||||| || ||||| ||||| || || | |||||| |||||    
T  35135672 ccactacttacaaagatttcatacccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaa 35135573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 571
Target Start/End: Original strand, 19264911 - 19265218
Alignment:
Q  266 gaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtg 365  Q
    |||||||| | |||||||||||||||||| || || |||||||   | || ||||| ||||||||||||||||||||  |||| || ||||||||  | |    
T  19264911 gaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgatgggtttcattgcattttcttcaaacaatactggcacattgtcggag 19265010  T
Q  366 atgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttcc 463  Q
    ||||||| ||  | ||||| ||| |||| | ||| |  ||||| ||| | ||||| ||||||||||   ||||||| ||||||| ||||||||| |  ||    
T  19265011 atgatatattcaaaatggtccatgcagcttaccatagtggttactttgatccggagatctcaaacactctcattgcgctcattccaaaaattgaaccacc 19265110  T
Q  464 tagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaat 563  Q
     |  || || ||  |||| |||||||| || || | |||||| || ||||||||||||||||| || ||||| ||||| || || | |||||| |||||     
T  19265111 cactacttacaaggatttcagacccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaac 19265210  T
Q  564 attcttgg 571  Q
    ||| ||||    
T  19265211 attattgg 19265218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 16321950 - 16322044
Alignment:
Q  272 tttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtga 366  Q
    |||| |||||||||||| |||||||| || ||||| |   | |||||||||||||||||||||||||| ||  |||| || ||||||||| ||||    
T  16321950 tttgctgccctcaactccatgaaaccctacaaagcacctggtcccgatggctttcattgcattttctttaaacaatactggcacattgttggtga 16322044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 571
Target Start/End: Original strand, 26791023 - 26791123
Alignment:
Q  471 tataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatattcttg 570  Q
    |||||| | ||||||||||| || || |  ||||| ||||||||||||||||| |||||  | || ||||| ||||||| ||| |||| ||||||| |||    
T  26791023 tataaagactttagacccattagcctttgtaacatcatctacaaaattatcactaaagtccttgtccatcgcctcagacctatccttaataatattattg 26791122  T
Q  571 g 571  Q
    |    
T  26791123 g 26791123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 39012049 - 39012161
Alignment:
Q  290 atgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcatt 389  Q
    |||||||| || |||||||   |||| |||||||| || ||||| || || ||| ||||||| |||||| || | ||||| |||||||||||||| || |    
T  39012049 atgaaaccctacaaagcccctggaccagatggcttccaatgcatattttttaagcaatattggcacattattggagatgacatttttcatatggtccaat 39012148  T
Q  390 cagccttccaaac 402  Q
    | || ||||||||    
T  39012149 ctgctttccaaac 39012161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 556
Target Start/End: Complemental strand, 23208522 - 23208229
Alignment:
Q  265 tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt 364  Q
    |||||| |||| ||||||||| || |||||||| || |||||||   | || || ||||| ||||| || ||||||||  ||||||| || || ||| |     
T  23208522 tgaagtttttgttgccctcaattccatgaaaccatacaaagcccctggcccggacggcttccattgtatcttcttcaaacaatattggcatatagttgga 23208423  T
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaa--tcattgcactcattcaaaaaattgatcttc 462  Q
    || || || || |||||||| ||  ||||||| || || ||||| ||| | ||||| || |||| ||   |||||||||||||||  ||||| || |  |    
T  23208422 gacgacatcttccatatggtccaaacagcctttcacacgggttactttgatccggagatttcaagcaccctcattgcactcattcctaaaatcgaccccc 23208323  T
Q  463 ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattct 556  Q
    | | |||||| ||| ||||||||||||||||||||| |||||||| |||||| |||||||| |||||| | |||||||||||||||| ||||||    
T  23208322 ccaccacatacaaagattttagacccatcagtctctgcaacataacctacaagattatcactaaagttcttgtgcatcgtctcagacctattct 23208229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 30909147 - 30909041
Alignment:
Q  82 attttgacaatttaggttgacgtaactcgtatgctatattactagttggagtttgttcttagaagtgttgatttgtgatttataaatgaatctgttatca 181  Q
    |||||| |||||| |||||||||||||| || | ||| ||||||||||  |||| ||  | |||||||||||||||||||||||||||||| ||| | ||    
T  30909147 attttggcaatttgggttgacgtaactcctaggttatcttactagttgtggtttttttcttgaagtgttgatttgtgatttataaatgaatgtgtcaaca 30909048  T
Q  182 ttaattt 188  Q
    |||||||    
T  30909047 ttaattt 30909041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 406
Target Start/End: Complemental strand, 16770605 - 16770476
Alignment:
Q  277 tgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatattttt 376  Q
    |||||| ||||||||||||||||| ||||| | | | || ||||| || || |||||||| |||||  |||| || |||||| || | |||||||||||     
T  16770605 tgcccttaactctatgaaaccttacaaagcaccaggtccggatggtttccaatgcatttttttcaaacaatactggcacattattggagatgatattttc 16770506  T
Q  377 catatggttcattcagccttccaaacaggt 406  Q
     ||||||| ||||| || ||||||||||||    
T  16770505 aatatggtgcattcggctttccaaacaggt 16770476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 30909246 - 30909188
Alignment:
Q  26 cattaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgatt 84  Q
    |||||||  ||| |||||||||||| || ||||||  ||||||||||||||||||||||    
T  30909246 cattacctgagcgttcgaaacattgacattcataggtaaattactatgttaatgtgatt 30909188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 571
Target Start/End: Complemental strand, 38647831 - 38647527
Alignment:
Q  269 gtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatg 368  Q
    ||||||| ||| || ||||| ||||||||||| ||||| |   | || ||||| || ||||| || ||||||||  ||||||| ||||| ||  | ||||    
T  38647831 gtgtttgctgcacttaactccatgaaaccttacaaagcacccggcccagatggtttccattgtatcttcttcaaacaatattggcacatagtcggagatg 38647732  T
Q  369 atatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgat-cttccta 465  Q
    | ||||  |||||||| |||||||| || || |||||| ||||| | ||||| || ||||||| ||  |||||||||||||  ||||||||| | ||| |    
T  38647731 acatttaccatatggtccattcagcttttcacacaggtcattttgatccggagatttcaaacactcttattgcactcattccgaaaattgattcatccaa 38647632  T
Q  466 gcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatat 565  Q
     ||| || ||| | || |||||||| ||||||| ||||||||||||||| ||||| || |||||| | ||||| |||||||||| |||||| | ||||||    
T  38647631 -cacttacaaagacttcagacccataagtctctgcaacataatctacaagattattactaaagttcttgtgcaccgtctcagacctattctcaataatat 38647533  T
Q  566 tcttgg 571  Q
    | ||||    
T  38647532 tattgg 38647527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 549
Target Start/End: Original strand, 23424107 - 23424281
Alignment:
Q  377 catatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttcctagcacatata 474  Q
    |||||||| |||  |||||||||||||||| | ||| | ||||| || ||||||| ||  ||||||||||||| |||||| ||    || | ||| || |    
T  23424107 catatggtccataaagccttccaaacaggtaactttgatccggagatttcaaacactctcattgcactcattccaaaaatcgaaacccccaccacttaca 23424206  T
Q  475 aatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagac 549  Q
    || ||||||||||||| ||||| | ||||||||||||||| |||||||| |||||| | ||||||||||||||||    
T  23424207 aagattttagacccataagtctatgcaacataatctacaagattatcactaaagttcttgtgcatcgtctcagac 23424281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 3660243 - 3660131
Alignment:
Q  290 atgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcatt 389  Q
    |||||||| || |||||||   |||| |||||||| || ||||| || || ||| ||||||| |||||| || | ||||| |||||||||||||| || |    
T  3660243 atgaaaccctacaaagcccctggaccagatggcttccaatgcatattttttaagcaatattggcacattattggagatgacatttttcatatggtccaat 3660144  T
Q  390 cagccttccaaac 402  Q
    | || ||||||||    
T  3660143 ctgctttccaaac 3660131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 452
Target Start/End: Original strand, 7813321 - 7813510
Alignment:
Q  265 tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt 364  Q
    |||||| |||| | ||||||| |||||||||||||| ||||||| | |||| || || || ||||| || ||||||||  | || || || |||||| |     
T  7813321 tgaagtttttgctaccctcaagtctatgaaaccttacaaagccccaggacctgacggtttccattgtatcttcttcaaacagtactggcatattgttggc 7813420  T
Q  365 gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaa--acaatcattgcactcattcaaaaa 452  Q
     ||||||||||||||||||| ||  ||||||||||||| ||||||||| | ||| | |||||||  ||  ||||||||||||||| ||||    
T  7813421 aatgatatttttcatatggtccaaacagccttccaaactggttattttgatccgaagatctcaagcactctcattgcactcattccaaaa 7813510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 406
Target Start/End: Original strand, 23944564 - 23944653
Alignment:
Q  317 gatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggt 406  Q
    ||||| ||||| || || ||||||||| |||| |||||||||||| | ||||||||||| | | ||||||| ||||||||||| ||||||    
T  23944564 gatggttttcaatgtatcttcttcaagcaatactgacacattgttggagatgatattttccgtttggttcactcagccttccatacaggt 23944653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 566
Target Start/End: Original strand, 23944735 - 23944815
Alignment:
Q  486 cccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatatt 566  Q
    ||||||||| | | ||| || ||||||||||| || || ||||||||||| || |||||||||| |||||||| |||||||    
T  23944735 cccatcagtttatgcaatatcatctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatatt 23944815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 7816844 - 7816937
Alignment:
Q  478 attttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatattcttgg 571  Q
    |||| |||||||||| ||||| ||| || ||||||||||| ||||| || |||||||| || || || || | |||||||||||| ||| ||||    
T  7816844 atttcagacccatcaatctctgcaatattatctacaaaataatcactaaggttttggtccaccgactaaggcctattcttactaacattattgg 7816937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 571
Target Start/End: Complemental strand, 54478057 - 54477753
Alignment:
Q  269 gtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatg 368  Q
    ||||||| | |||| ||||||||||| || || ||||||  | | || |||||||| || | ||| ||||||||  ||||||| ||||||||| ||||||    
T  54478057 gtgtttgcttcccttaactctatgaagccctataaagcctcaggcccagatggcttccactacatcttcttcaaacaatattggcacattgttggtgatg 54477958  T
Q  369 atatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttcctag 466  Q
    |||| | ||| ||||| ||  |||| || ||||  ||||| ||| | || || ||||||||||   |||||||||||||||  | |||||| |  || |     
T  54477957 atatctatcaaatggtccacacagcttttcaaatcggttactttgatccagagatctcaaacactctcattgcactcattcctataattgacccacccac 54477858  T
Q  467 cacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatatt 566  Q
     || |||||| | || ||||||||||| || |  || || |||||||||||||||||||| |||||||| || || || || | |||||||||||| |||    
T  54477857 tacttataaagacttcagacccatcagcctttgtaatatcatctacaaaattatcacaaaggttttggttcaccgactaaggcctattcttactaacatt 54477758  T
Q  567 cttgg 571  Q
     ||||    
T  54477757 attgg 54477753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 33803716 - 33803775
Alignment:
Q  507 atctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatatt 566  Q
    ||||||||||| || || ||||||||||| || |||||||||| |||||||| |||||||    
T  33803716 atctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatatt 33803775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 75467 - 75525
Alignment:
Q  326 cattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggt 384  Q
    |||||||||||||||||  |||| || ||||||||| ||||||||||||| || |||||    
T  75467 cattgcattttcttcaaacaatactggcacattgttggtgatgatattttccaaatggt 75525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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