View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19169_high_7 (Length: 281)
Name: NF19169_high_7
Description: NF19169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19169_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 15356325 - 15356586
Alignment:
| Q |
1 |
gttatatttgcctatattttgttctcaacttcgtaatttaatttctcagttatacttttgaattttgttacaatatgctttacatgttactaaaattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15356325 |
gttatatttgcctatattttgttcacaacttcgtaatttaatttctcagttatacttttgaattttgttacaatatgctttacatgttactaaaattcaa |
15356424 |
T |
|
| Q |
101 |
agtgaatgagataaatattggtttcttacaacaggcactattagcaaagagtgatgtggaggcactaaaaccaaagtcaaatcaaaccaattcaacaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15356425 |
agtgaatgagataaatattggtttcttaca---ggcactattagcaaagagtgatgtggaagcactaaaaccaaagtcaaatcaaaccaattcaacaaaa |
15356521 |
T |
|
| Q |
201 |
tcatcaaagcttgctatgagatccataacaccaagtcataacagattgagaccaaacctcattaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15356522 |
tcatcaaagcttgctatgagatccataacaccaagtcataacagattgagaccaaacctcattaa |
15356586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University