View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19169_high_9 (Length: 249)

Name: NF19169_high_9
Description: NF19169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19169_high_9
NF19169_high_9
[»] chr8 (4 HSPs)
chr8 (1-242)||(15356087-15356325)
chr8 (95-238)||(2537136-2537276)
chr8 (166-224)||(40381645-40381703)
chr8 (144-224)||(12585674-12585754)
[»] chr4 (2 HSPs)
chr4 (107-242)||(27907210-27907340)
chr4 (92-242)||(40286540-40286693)
[»] chr2 (1 HSPs)
chr2 (87-239)||(7813549-7813696)
[»] chr5 (2 HSPs)
chr5 (81-203)||(25911861-25911980)
chr5 (203-242)||(25911792-25911831)
[»] chr6 (2 HSPs)
chr6 (138-224)||(33106823-33106908)
chr6 (93-239)||(13237471-13237617)
[»] chr1 (1 HSPs)
chr1 (145-241)||(31570502-31570598)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15356325 - 15356087
Alignment:
Q  1 cttgacaagtagaatcttttctag-cagcttgaactccctattttgcaccaagtgtcaagaagataaagtatcgtagattcatatattatacttcatttt 99  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15356325 cttgacaagtagaatcttttctaggcaggttggactccctattttgcaccaagtgtcaagaagataaagtatcgtagattcatatattatatttcatttt 15356226  T
Q  100 taaaagtataa--atatgtatcataattgtcctctacgatcgattttcatattatgaaaatattggatgattttctcatcatcaataccaacaaaagtat 197  Q
    |||||||||||  |||| |||||||||  | |||||    ||||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||| |    
T  15356225 taaaagtataaatatatatatcataat--ttctcta----cgatttttatattatgaaaatattggataattttctcattatcaataccaacgaaagtgt 15356132  T
Q  198 atctctctatataagtaactaaacaattgtttaatcattcatctc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15356131 atctctctatataagtaactaaacaattgtttaatcattcatctc 15356087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 238
Target Start/End: Original strand, 2537136 - 2537276
Alignment:
Q  95 atttttaaaagtataaatatgtatcataattgtcctctacgatcgattttcatattatgaaaatattggatgattttctcatcatcaataccaacaaaag 194  Q
    |||||||| |||||||||||  ||||||||||| |||||||||   | | |||||| |  | | |||| |||||||||||||  |||||||||||||||     
T  2537136 atttttaatagtataaatatacatcataattgttctctacgat---tctccatattttagatacattgaatgattttctcattttcaataccaacaaaaa 2537232  T
Q  195 tatatctctctatataagtaactaaacaattgtttaatcattca 238  Q
    ||| ||||||||||||||||||||||||||  ||||| ||||||    
T  2537233 tatctctctctatataagtaactaaacaataatttaaccattca 2537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 40381645 - 40381703
Alignment:
Q  166 gattttctcatcatcaataccaacaaaagtatatctctctatataagtaactaaacaat 224  Q
    |||||||||||  |||||| ||| |||| ||||| ||||||||||| ||||||||||||    
T  40381645 gattttctcattttcaatatcaataaaaatatatttctctatataaataactaaacaat 40381703  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 12585674 - 12585754
Alignment:
Q  144 tcatattatgaaaatattggatgattttctcatcatcaataccaacaaaagtatatctctctatataagtaactaaacaat 224  Q
    ||||||| || |||||| | |||||||||||||  |||||  ||| |||| | | |||||||||||||||||||| |||||    
T  12585674 tcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctatataagtaactagacaat 12585754  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 107 - 242
Target Start/End: Original strand, 27907210 - 27907340
Alignment:
Q  107 ataaatatgtatcataattgtcctctacgatcgattttcatattatgaaaatattggatgattttctcatcatcaataccaacaaaagtatatctctcta 206  Q
    ||||||||  |||||||||||||| ||||||   | | |||||| ||||||||||| |||||||| ||||  |||||||||||||||  |||||||||||    
T  27907210 ataaatatacatcataattgtcctttacgat---tctccatattttgaaaatattgaatgattttttcattttcaataccaacaaaa--atatctctcta 27907304  T
Q  207 tataagtaactaaacaattgtttaatcattcatctc 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27907305 tataagtaactaaacaattgtttaaccattcatctc 27907340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 242
Target Start/End: Complemental strand, 40286693 - 40286540
Alignment:
Q  92 ttcatttttaaaagtataaatatgtatcataattgtcctctacgatcgattttcatattatgaaaatattggatgattttctcatcatcaataccaacaa 191  Q
    ||||||||| |||  ||||||||  ||||||||||||| | |||||   | | |||||| ||||||||||| |||||||| ||||  |||||||||||||    
T  40286693 ttcatttttgaaatcataaatatacatcataattgtccccaacgat---tctccatattctgaaaatattgaatgattttttcattttcaataccaacaa 40286597  T
Q  192 aagtatatctctc------tatataagtaactaaacaattgtttaatcattcatctc 242  Q
    || | | ||||||      |||||||| |||||||||||||||||| ||| ||||||    
T  40286596 aaatctctctctctctatatatataagcaactaaacaattgtttaaccatccatctc 40286540  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 7813696 - 7813549
Alignment:
Q  87 tatacttcatttttaaaagtataaatatgtatcataattgtcctctacgatcgattttcatattatgaaaatattggatgattttctcatcatcaatacc 186  Q
    |||| ||||||||| |||||||||||||  ||||||| |||| ||||||||  |    |||||| |  |||||||| |||||||||||||  | ||||||    
T  7813696 tatatttcatttttgaaagtataaatatacatcataactgtcttctacgattcac---catattctagaaatattgaatgattttctcattttaaatacc 7813600  T
Q  187 aacaaaagtatatctctctatataagtaactaaacaattgtttaatcattcat 239  Q
    ||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  7813599 aacaaa--tatatctctctatataagtaactaaacaattgtttaaccattcat 7813549  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 25911980 - 25911861
Alignment:
Q  81 atatattatacttcatttttaaaagtataaatatgtatcataattgtcctctacgatcgattttcatattatgaaaatattggatgattttctcatcatc 180  Q
    |||||||||| |||||||||||||| ||||||||  ||| ||||||| |||||| ||   | | |||||| | ||||||||| |||||||||||||  ||    
T  25911980 atatattatatttcatttttaaaagcataaatatacatcgtaattgtgctctaccat---tctccatattctaaaaatattgaatgattttctcattttc 25911884  T
Q  181 aataccaacaaaagtatatctct 203  Q
    ||||| ||||||||||| |||||    
T  25911883 aatacaaacaaaagtatctctct 25911861  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 25911831 - 25911792
Alignment:
Q  203 tctatataagtaactaaacaattgtttaatcattcatctc 242  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  25911831 tctatataagtaattaaacaattgtttaatcattcatctc 25911792  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 33106908 - 33106823
Alignment:
Q  138 cgattttcatattatgaaaatattggatgattttctcatcatcaataccaacaaaagtatatctctctatataagtaactaaacaat 224  Q
    ||||||| |||||||| |||| ||| ||||||| |||||  |||||| ||| |||| ||||| ||||||||||| ||||||||||||    
T  33106908 cgatttttatattatgtaaattttgaatgattt-ctcattttcaatatcaataaaaatatatttctctatataaataactaaacaat 33106823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 13237617 - 13237471
Alignment:
Q  93 tcatttttaaaagtataaatatgtatcataattgtcctctacgatcgattttcatattatgaaaatattggatgattttctcatcat---caataccaac 189  Q
    |||||||| |||| ||||||||  |||||||||||| | ||||||   | | |||||| || |||||||| ||| |||| |  ||||   || |||||||    
T  13237617 tcatttttgaaagcataaatatacatcataattgtcttatacgat---tctccatattctggaaatattgaatgttttttttttcattttcagtaccaac 13237521  T
Q  190 aaaagtatatctctctatataagtaactaaacaattgtttaatcattcat 239  Q
    |||||||| ||| ||||||||||  ||||||||||| ||||| |||||||    
T  13237520 aaaagtatctctatctatataagatactaaacaattatttaaccattcat 13237471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 31570598 - 31570502
Alignment:
Q  145 catattatgaaaatattggatgattttctcatcatcaataccaacaaaagtatatctctctatataagtaactaaacaattgtttaatcattcatct 241  Q
    |||||| | ||||||||| |||||| | ||||  | |||| |||||||| ||| ||||||||||||| |||||||| |||| ||||| |||| ||||    
T  31570598 catattctaaaaatattgaatgattatttcatttttaataacaacaaaaatatttctctctatataaataactaaataattttttaaccatttatct 31570502  T

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