View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19169_low_2 (Length: 476)
Name: NF19169_low_2
Description: NF19169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19169_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 238 - 457
Target Start/End: Complemental strand, 40458503 - 40458287
Alignment:
| Q |
238 |
agttttagaggggaggatacttattgtaccttcacaggtaatctctatcatgctttacgcaacaagaaaatgaagaccttcttcttaccacatcaaattc |
337 |
Q |
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| T |
40458503 |
agttttagaggggaagatacttattgtaccttcgcaggtaatctctatcatgctttacgcaacaagaaaatcaagaccttcttcccacatgatcaaattc |
40458404 |
T |
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| Q |
338 |
aaaatgatgatgatgaggaacttcaactttcaccttctattctcaaggcaattcaggaatcaaggatttcaattgtcgttctctcaaaaaactatgcaac |
437 |
Q |
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| T |
40458403 |
aaaatgatgatga---ggaacttcaactttcaccttctattctcaaggcaattcaggaatcaaggatttcaatcgtcgttctctcaaaaaactatgcaac |
40458307 |
T |
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| Q |
438 |
ctccagacgttgcctcaacg |
457 |
Q |
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| T |
40458306 |
ctccacacgttgcctcaacg |
40458287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 239 - 449
Target Start/End: Original strand, 40405260 - 40405473
Alignment:
| Q |
239 |
gttttagaggggaggatacttattgtaccttcacaggtaatctctatcatgctttacgcaacaagaaaatgaagaccttcttcttaccacatcaaattca |
338 |
Q |
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| T |
40405260 |
gttttagaggggaggacacttactgtacctttacaggtaatctctatcatggtttgagcaacaagagaatcaagaccttcttcttcccacatcaaattca |
40405359 |
T |
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| Q |
339 |
aaatg------atgatgatgaggaacttcaactttcaccttctattctcaaggcaattcaggaatcaaggatttcaattgtcgttctctcaaaaaactat |
432 |
Q |
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| T |
40405360 |
aaatgattataatgataatgagcaacttcaacattcac---ctattctcaaggcaattcgggagtcaaggatttcaattgttgttctctctgaaaacttc |
40405456 |
T |
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| Q |
433 |
gcaacctccagacgttg |
449 |
Q |
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| T |
40405457 |
gcatcctccacacgttg |
40405473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 40458682 - 40458644
Alignment:
| Q |
41 |
attaaagaggagtcaacaacaaaccgcgtggattctcta |
79 |
Q |
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| T |
40458682 |
attaaagaggagtcaacagcaaaccgcgtggattctcta |
40458644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 40407736 - 40407816
Alignment:
| Q |
239 |
gttttagaggggaggatacttattgtaccttcacaggtaatctctatcatgctttacgcaacaagaaaatgaagaccttct |
319 |
Q |
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| T |
40407736 |
gttttagaaaggtggacacttactataccttcacaggtagtctctatcatgctctgcgtaacaagagaatcaagaccttct |
40407816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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