View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19169_low_8 (Length: 279)

Name: NF19169_low_8
Description: NF19169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19169_low_8
NF19169_low_8
[»] chr4 (2 HSPs)
chr4 (1-270)||(18343321-18343590)
chr4 (203-266)||(50593633-50593696)
[»] scaffold0702 (1 HSPs)
scaffold0702 (5-270)||(6876-7141)
[»] chr8 (1 HSPs)
chr8 (5-270)||(35194961-35195226)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-269)||(163780-164048)
scaffold0002 (7-270)||(278046-278309)
[»] scaffold1779 (1 HSPs)
scaffold1779 (1-270)||(118-387)
[»] chr2 (1 HSPs)
chr2 (1-47)||(36841096-36841142)
[»] chr5 (1 HSPs)
chr5 (1-76)||(10258309-10258384)
[»] chr1 (1 HSPs)
chr1 (82-156)||(5478421-5478495)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 18343321 - 18343590
Alignment:
Q  1 gatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343321 gatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacaggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttc 18343420  T
Q  101 gtgacattgctcgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaggtgcctgaagagcatattttccgaaggaaattgtattacctcg 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18343421 gtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcg 18343520  T
Q  201 ataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343521 ataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatg 18343590  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 50593696 - 50593633
Alignment:
Q  203 aggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagtt 266  Q
    ||||||||| ||| ||| ||||| |||||||||||  | |||||||||||| ||||||||||||    
T  50593696 aggcttttcttttaatttttccttgatgttgtttattggatctggttctttgggggttatagtt 50593633  T

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Target: scaffold0702 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 7141 - 6876
Alignment:
Q  5 cttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtga 104  Q
    ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  7141 cttttcctgaacccatacgcgtttcggtaggtattactgtaacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtga 7042  T
Q  105 cattgctcgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaggtgcctgaagagcatattttccgaaggaaattgtattacctcgatag 204  Q
     ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7041 tattgcccgtcgccttgcttctatttgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgatag 6942  T
Q  205 gcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatg 270  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6941 gcttttcctttcattcttcctcgatgttgtttacgaaatctggttcttttggggttatagttgatg 6876  T

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Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 35195226 - 35194961
Alignment:
Q  5 cttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtga 104  Q
    ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  35195226 cttttcctgaacccatacgcgtttcggtaggtattactgtaacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtga 35195127  T
Q  105 cattgctcgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaggtgcctgaagagcatattttccgaaggaaattgtattacctcgatag 204  Q
     ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35195126 tattgcccgtcgccttgcttctatttgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgatag 35195027  T
Q  205 gcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatg 270  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35195026 gcttttcctttcattcttcctcgatgttgtttacgaaatctggttcttttggggttatagttgatg 35194961  T

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Target: scaffold0002 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 164048 - 163780
Alignment:
Q  1 gatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttc 100  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  164048 gatccttttcccgaacccatacgcgtttcggtagatcttaatgtaacaggtttgtctggaaatatgcatacccatattttcccacctcggcgaacatttc 163949  T
Q  101 gtgacattgctcgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaggtgcctgaagagcatattttccgaaggaaattgtattacctcg 200  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||    
T  163948 gtgacattgcccatcgccctacttctatttgtctagatgtgatccaagcgggctcaagtgcctaaagaacatatttttcgaaggaaattgtattacctcg 163849  T
Q  201 ataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgat 269  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  163848 ataggcttttcctttcattcttcctcgatgttgtttgcggaatctggttcttttggggttatagttgat 163780  T

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Target: scaffold0002; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 278046 - 278309
Alignment:
Q  7 tttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgaca 106  Q
    |||||||| |||||||| ||||| || ||||||| |||||| |||||||| |||||||| |||||||||||||| ||||| || ||  ||| |||||  |    
T  278046 tttcccgagcccatacgtgtttccgtgggtcttagtgtaaccggtttgtcgggaaatatacgtacccatatttttccaccacgacgtgcatatcgtgtta 278145  T
Q  107 ttgctcgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaggtgcctgaagagcatattttccgaaggaaattgtattacctcgataggc 206  Q
    |||||| ||| ||||||||||| ||||| |  |||||||||||||| ||| |||| |||||||||||| | || ||  ||||   ||| |||||  |||     
T  278146 ttgctcttcgtcctgcttctatctgtctcgccgtgatccaagcgggttcaagtgcttgaagagcatatctaccaaaacaaatacgattgcctcggaagga 278245  T
Q  207 ttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatg 270  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||    
T  278246 ttttcctttcattcttcctctatgttgtttgcgaaatctggttcttttggggttatagtcgatg 278309  T

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Target: scaffold1779 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 387 - 118
Alignment:
Q  1 gatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttc 100  Q
    |||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| ||| ||||| ||||| |||||||    
T  387 gatcctttccccgaacccatacgtgtttctgtaggtcttaccgtaactggtttgtctggaaatatacgtacccatagttttccaccacggcgtacatttc 288  T
Q  101 gtgacattgctcgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaggtgcctgaagagcatattttccgaaggaaattgtattacctcg 200  Q
    ||| |||||| || ||||| |||||||||||||||||||| ||||||||||| ||| |||| |||||||||||| | |||||  ||||   |||||||||    
T  287 gtgtcattgcgcggcgccccgcttctatttgtctagatgtaatccaagcgggttcaagtgcttgaagagcatatctaccgaaacaaatccgattacctcg 188  T
Q  201 ataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatg 270  Q
    ||| | | | || ||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  187 ataagatatccccttcattcttcctctatgttgtttacgaaatcgggttcttttggggttatagttgatg 118  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36841096 - 36841142
Alignment:
Q  1 gatccttttcccgaacccatacgcgtttcggtaggtcttactgtaac 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36841096 gatccttttcccgaacccatacgcgtttcggtaggtcttactgtaac 36841142  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10258384 - 10258309
Alignment:
Q  1 gatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccata 76  Q
    ||||| |||||| ||||||||| |||||| |||||||||||| ||||  |||||||||||| ||||| ||||||||    
T  10258384 gatccgtttcccaaacccatacacgtttcagtaggtcttactctaacaagtttgtctggaattatgcatacccata 10258309  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 5478421 - 5478495
Alignment:
Q  82 ccacctcggcgaacatttcgtgacattgctcgtcgccctgcttctatttgtctagatgtgatccaagcgggctca 156  Q
    |||||||| ||||||||||||||||||   |||| ||    ||||||||||||||||||||||||||| ||||||    
T  5478421 ccacctcgacgaacatttcgtgacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctca 5478495  T

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