View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19169_low_9 (Length: 250)

Name: NF19169_low_9
Description: NF19169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19169_low_9
NF19169_low_9
[»] chr6 (19 HSPs)
chr6 (16-151)||(1334639-1334774)
chr6 (18-153)||(26402624-26402761)
chr6 (26-93)||(19369805-19369872)
chr6 (103-157)||(785384-785438)
chr6 (31-89)||(10031563-10031621)
chr6 (44-93)||(6751886-6751935)
chr6 (44-160)||(32225327-32225443)
chr6 (38-93)||(785459-785515)
chr6 (18-93)||(22745938-22746012)
chr6 (107-157)||(34197185-34197235)
chr6 (52-130)||(34595148-34595226)
chr6 (38-91)||(5579654-5579707)
chr6 (97-157)||(26178542-26178602)
chr6 (52-95)||(10157998-10158041)
chr6 (52-126)||(28715309-28715383)
chr6 (16-93)||(426518-426595)
chr6 (52-129)||(16833322-16833399)
chr6 (38-90)||(20809643-20809695)
chr6 (44-80)||(29959181-29959217)
[»] chr4 (21 HSPs)
chr4 (158-250)||(40391670-40391762)
chr4 (158-250)||(40380329-40380421)
chr4 (158-239)||(41054701-41054782)
chr4 (42-154)||(13307881-13307993)
chr4 (37-145)||(44362665-44362773)
chr4 (24-157)||(37496690-37496834)
chr4 (18-82)||(34589721-34589785)
chr4 (107-154)||(39619045-39619092)
chr4 (19-85)||(10634971-10635037)
chr4 (47-90)||(10164861-10164904)
chr4 (107-157)||(5998885-5998935)
chr4 (16-93)||(11797632-11797712)
chr4 (52-93)||(12895120-12895161)
chr4 (34-79)||(28663488-28663533)
chr4 (45-93)||(13117436-13117484)
chr4 (38-93)||(21945503-21945558)
chr4 (45-90)||(13484030-13484076)
chr4 (52-126)||(29205458-29205532)
chr4 (24-130)||(56049863-56049968)
chr4 (38-126)||(23292957-23293045)
chr4 (44-80)||(49887762-49887798)
[»] chr2 (14 HSPs)
chr2 (21-157)||(43585945-43586081)
chr2 (25-91)||(13501084-13501150)
chr2 (11-93)||(33884024-33884106)
chr2 (24-93)||(11223867-11223936)
chr2 (47-90)||(14450802-14450845)
chr2 (11-74)||(39399885-39399948)
chr2 (16-90)||(44984657-44984729)
chr2 (108-157)||(14450707-14450756)
chr2 (48-89)||(24067263-24067304)
chr2 (16-93)||(24067728-24067805)
chr2 (44-89)||(42665614-42665659)
chr2 (45-93)||(14373431-14373479)
chr2 (30-82)||(17808512-17808564)
chr2 (38-90)||(18512149-18512201)
[»] chr7 (16 HSPs)
chr7 (16-145)||(1885551-1885675)
chr7 (19-157)||(5937361-5937499)
chr7 (37-158)||(25956446-25956564)
chr7 (31-90)||(44317293-44317352)
chr7 (30-90)||(2144546-2144604)
chr7 (16-93)||(22801745-22801822)
chr7 (40-154)||(48963995-48964119)
chr7 (29-89)||(35238192-35238252)
chr7 (23-93)||(36013802-36013873)
chr7 (38-90)||(9050140-9050192)
chr7 (41-84)||(2143866-2143909)
chr7 (38-93)||(7438706-7438761)
chr7 (16-89)||(36196760-36196831)
chr7 (44-90)||(37820086-37820132)
chr7 (25-90)||(10702551-10702615)
chr7 (36-93)||(38134410-38134467)
[»] chr5 (17 HSPs)
chr5 (16-91)||(21319951-21320026)
chr5 (17-159)||(7621168-7621315)
chr5 (11-93)||(19167580-19167663)
chr5 (11-93)||(30080505-30080587)
chr5 (16-79)||(41558701-41558764)
chr5 (16-90)||(38784784-38784858)
chr5 (45-93)||(10010561-10010609)
chr5 (16-93)||(20763353-20763432)
chr5 (50-93)||(15294943-15294986)
chr5 (25-91)||(15302512-15302576)
chr5 (39-94)||(24906304-24906359)
chr5 (116-156)||(9031879-9031919)
chr5 (24-126)||(42893346-42893448)
chr5 (52-93)||(8420041-8420082)
chr5 (16-93)||(13287403-13287480)
chr5 (38-91)||(20260541-20260593)
chr5 (38-91)||(31084323-31084376)
[»] chr8 (16 HSPs)
chr8 (16-91)||(26915246-26915321)
chr8 (16-90)||(42874500-42874574)
chr8 (16-153)||(34073922-34074058)
chr8 (48-91)||(31119097-31119140)
chr8 (39-89)||(27733848-27733898)
chr8 (18-90)||(10497823-10497895)
chr8 (52-126)||(36450725-36450799)
chr8 (18-91)||(2652319-2652391)
chr8 (16-93)||(18170486-18170563)
chr8 (16-93)||(18634054-18634131)
chr8 (16-93)||(22651954-22652031)
chr8 (44-93)||(24295141-24295190)
chr8 (52-93)||(31548297-31548338)
chr8 (25-93)||(5307048-5307115)
chr8 (16-112)||(20873047-20873143)
chr8 (37-93)||(25566840-25566896)
[»] scaffold0122 (1 HSPs)
scaffold0122 (27-157)||(10247-10367)
[»] scaffold0314 (1 HSPs)
scaffold0314 (44-153)||(8954-9061)
[»] chr3 (9 HSPs)
chr3 (44-126)||(14338454-14338536)
chr3 (26-82)||(11093558-11093614)
chr3 (59-156)||(34834869-34834965)
chr3 (38-93)||(49179719-49179774)
chr3 (52-126)||(20503479-20503553)
chr3 (52-118)||(10954966-10955032)
chr3 (39-91)||(12704663-12704715)
chr3 (37-93)||(26508109-26508165)
chr3 (24-80)||(41319327-41319383)
[»] chr1 (11 HSPs)
chr1 (38-87)||(24462280-24462329)
chr1 (23-94)||(40686761-40686832)
chr1 (108-154)||(18950996-18951041)
chr1 (25-93)||(38078665-38078733)
chr1 (18-90)||(46748915-46748987)
chr1 (48-89)||(18946042-18946083)
chr1 (16-93)||(21378556-21378633)
chr1 (39-91)||(24176820-24176873)
chr1 (24-93)||(24577190-24577259)
chr1 (45-90)||(28170389-28170433)
chr1 (18-85)||(16925593-16925661)
[»] scaffold0652 (1 HSPs)
scaffold0652 (52-130)||(429-507)
[»] scaffold0024 (1 HSPs)
scaffold0024 (24-89)||(18116-18181)
[»] scaffold0050 (1 HSPs)
scaffold0050 (38-125)||(70278-70365)
[»] scaffold0504 (2 HSPs)
scaffold0504 (108-157)||(8642-8691)
scaffold0504 (44-89)||(8705-8750)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 1334639 - 1334774
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 115  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||   | ||||||||||||||| |    
T  1334639 acgacactgacacagacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaa 1334738  T
Q  116 caccaggacacaccttcaaccagaagtgtccgtgca 151  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1334739 caccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 26402761 - 26402624
Alignment:
Q  18 gacactgacacggacacattgacacagataaaattttgaaaaaa--tgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 115  Q
    ||||||||||| |||| || ||||  ||||||||||||||||||  ||||||||||||  ||||||||||||||||||   ||||||||| | ||| |||    
T  26402761 gacactgacacagacagatcgacaatgataaaattttgaaaaaaaatgacataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttgga 26402662  T
Q  116 caccaggacacaccttcaaccagaagtgtccgtgcaac 153  Q
    ||||  |||||  |||||| ||||||||||||||||||    
T  26402661 caccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 19369805 - 19369872
Alignment:
Q  26 cacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  19369805 cacggacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggt 19369872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 785438 - 785384
Alignment:
Q  103 gatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  785438 gatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 10031563 - 10031621
Alignment:
Q  31 acacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  10031563 acacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 6751935 - 6751886
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6751935 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggt 6751886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 32225443 - 32225327
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtg 143  Q
    ||||||||||||| ||||| || | | |||| ||||||||| ||||||||   ||||||||  | ||||||||||| |||||||||||||| ||| ||||    
T  32225443 gataaaattttgagaaaataacgtgagtcaatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtg 32225344  T
Q  144 tccgtgcaacagagctt 160  Q
    |  ||||| ||||||||    
T  32225343 tttgtgcagcagagctt 32225327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 785515 - 785459
Alignment:
Q  38 gacacagataaaattttgaaaa-aatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  785515 gacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgtcggt 785459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 22745938 - 22746012
Alignment:
Q  18 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||| |||| ||||||| ||||| ||||||||||||| ||||||  ||| ||||| ||||||||||||||||||    
T  22745938 gacactcacactgacacatcgacac-gataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggt 22746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 34197185 - 34197235
Alignment:
Q  107 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||| ||||    
T  34197185 cgtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagag 34197235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 34595148 - 34595226
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacct 130  Q
    ||||||||||| ||||||||||  ||||| ||||||||||||   ||||||||  |||||| |||||| ||||||||||    
T  34595148 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacct 34595226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 5579654 - 5579707
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    ||||| ||||||||||||| ||||||||||| ||||| ||| ||||||||||||    
T  5579654 gacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 26178542 - 26178602
Alignment:
Q  97 ggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    ||||||||  ||||||||||| | ||||| |||||||| |||||||||||||||| |||||    
T  26178542 ggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 10157998 - 10158041
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac 95  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgtcggtac 10158041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 28715309 - 28715383
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 126  Q
    ||||||||||||||||||||||  ||||| ||||||||||||   ||||||||  |||||  |||||| ||||||    
T  28715309 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacac 28715383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 426595 - 426518
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| ||||| |||||   ||||||| ||| | ||||||||||| |||||||| || ||||| ||||||||||||    
T  426595 acgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggt 426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 16833322 - 16833399
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacc 129  Q
    ||||||||||| ||||| ||||  ||||| ||||||||||||  | |||||||  || ||| ||||||||||||||||    
T  16833322 tttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacacacc 16833399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 20809643 - 20809695
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    ||||| ||||||||||||||||| | |||||||  || |||||||||||||||    
T  20809643 gacaccgataaaattttgaaaaattaacataatctaaggtaatcacaagtgtc 20809695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 29959181 - 29959217
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaat 80  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  29959181 gataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 40391670 - 40391762
Alignment:
Q  158 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcatctccgttca 250  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40391670 cttactatgctaaactttatctttcaaaatttcatctcgtgcatccagagaacatggacattcatgacattctaggattagcatctctgttca 40391762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 40380329 - 40380421
Alignment:
Q  158 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcatctccgttca 250  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  40380329 cttactatgctaaactttatctttcaaaatttcatctcgtgcatccagagaacatgaacattcatgacattctaggattagcatctctgttca 40380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 41054782 - 41054701
Alignment:
Q  158 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagc 239  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||  ||||||| |||||||||    
T  41054782 cttactatgctaaattttatctttcaaaatttcagcttgtacatccagagaacaaggacattcgcgacattccaggattagc 41054701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 13307881 - 13307993
Alignment:
Q  42 cagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaag 141  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| |||   ||||||||  |||||| ||||||| ||||  ||||||| ||||||    
T  13307881 cagataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaag 13307980  T
Q  142 tgtccgtgcaaca 154  Q
    |||  ||||||||    
T  13307981 tgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 44362665 - 44362773
Alignment:
Q  37 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaacc 136  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||||||| |||    |||||||  ||| ||||||| | ||||||||||| || |    
T  44362665 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatc 44362764  T
Q  137 agaagtgtc 145  Q
    |||||||||    
T  44362765 agaagtgtc 44362773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 37496690 - 37496834
Alignment:
Q  24 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcgg-----------tactggacacgatgcgtgtc 112  Q
    ||||| ||||| ||||||| |||||  |||||| ||||||||||||||||| |||||||||||||||||           | | ||||||||  | ||||    
T  37496690 gacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtc 37496789  T
Q  113 ggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    ||||||| |||||| ||||||| || |||||||||||||||||||    
T  37496790 ggacaccgggacacgccttcaatcataagtgtccgtgcaacagag 37496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 34589785 - 34589721
Alignment:
Q  18 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 82  Q
    ||||| ||||||||||||||||||| ||||| | ||||| ||||||||||||||||| |||||||    
T  34589785 gacacggacacggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 39619092 - 39619045
Alignment:
Q  107 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaaca 154  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  39619092 cgtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 10634971 - 10635037
Alignment:
Q  19 acactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaa 85  Q
    |||||||||||| ||| | || || ||||||||||||||||||||||||||||||| || |||||||    
T  10634971 acactgacacgggcacgtcgatactgataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 10164904 - 10164861
Alignment:
Q  47 aaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    ||||| |||||||||||||||||||||| |||||||||||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 10164861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 5998885 - 5998935
Alignment:
Q  107 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    ||||||||||||| |||||||||||||| || ||||||| |||||||||||    
T  5998885 cgtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 11797712 - 11797632
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaa---tgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||| |||||||| |||||  ||||  |||||||||||||||||   |||||||||| || ||||||||||||||||||    
T  11797712 acgacattgacacgggcacatcaacaccaataaaattttgaaaaaaaaatgacataatttaatgtaatcacaagtgtcggt 11797632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 12895161 - 12895120
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  12895161 tttgaaaaaatcacataattcaaagtaattacaagtgtcggt 12895120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 28663488 - 28663533
Alignment:
Q  34 cattgacacagataaaattttgaaaaaatgacataattcaaagtaa 79  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  28663488 cattgacacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 13117436 - 13117484
Alignment:
Q  45 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||| || ||||||||| ||||||| ||||||||||||||||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggt 13117484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 21945503 - 21945558
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| ||| | ||||||||||||||||||||||  ||||| ||||||||||||    
T  21945503 gacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggt 21945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 13484030 - 13484076
Alignment:
Q  45 ataaaattttgaaaaaatgacataattcaaa-gtaatcacaagtgtc 90  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcacaagtgtc 13484076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 29205458 - 29205532
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 126  Q
    ||||||||||| ||||||||||  ||||| ||||||||||||  |||||||||  | |||| |||||| ||||||    
T  29205458 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 56049863 - 56049968
Alignment:
Q  24 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccagga 123  Q
    ||||||||||||| ||||| ||||| | |||| | |||||||||| ||||| ||||||| | ||||||||    |||| ||| ||| || ||||||||||    
T  56049863 gacacggacacatcgacaccgataataatttg-agaaatgacatagttcaatgtaatcatatgtgtcggtgtcagacatgatacgtatccgacaccagga 56049961  T
Q  124 cacacct 130  Q
    |||||||    
T  56049962 cacacct 56049968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 23293045 - 23292957
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 126  Q
    ||||||| ||| | ||||||||||| ||||||||||   |||| ||||||||||||   ||||||||  |||||| |||||| ||||||    
T  23293045 gacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacac 23292957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 49887762 - 49887798
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaat 80  Q
    |||||||||||||| |||||||||||||||| |||||    
T  49887762 gataaaattttgaagaaatgacataattcaatgtaat 49887798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 43586081 - 43585945
Alignment:
Q  21 actgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacacca 120  Q
    |||||||| ||||| |  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||   ||||||||| |||||| |||||      
T  43586081 actgacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacat 43585982  T
Q  121 ggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  43585981 ggacacaccttcaatcagaagtgttcgtgcaacagag 43585945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 13501150 - 13501084
Alignment:
Q  25 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    |||||||||||| ||| | ||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  13501150 acacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 33884024 - 33884106
Alignment:
Q  11 cagagacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||| ||| ||||||||| ||||||| || || ||||||||| ||| |||||||||| |||||  ||||| ||||||||||||    
T  33884024 cagacacggcactgacacagacacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcggt 33884106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 11223936 - 11223867
Alignment:
Q  24 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||| |||||  |||||||| ||| ||||||||||||| ||||||||||  ||||| ||||||||||||    
T  11223936 gacacagacacgctgacacagctaatattttgaaaaaataacataattcagtgtaattacaagtgtcggt 11223867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 14450845 - 14450802
Alignment:
Q  47 aaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgtc 14450802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 39399885 - 39399948
Alignment:
Q  11 cagagacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaa 74  Q
    |||| ||||||  ||||| ||||||||||||| ||| ||||||| | |||||||||||||||||    
T  39399885 cagacacgacatggacactgacacattgacaccgatgaaatttttagaaaatgacataattcaa 39399948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 44984729 - 44984657
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||||||||||||  |||| | |||||  || ||||||||||||||||| ||||||||| || ||||||||||||    
T  44984729 acgacactgacac--acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgtc 44984657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 14450756 - 14450707
Alignment:
Q  108 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    ||||| |||||| ||||||  |||||| ||||||||||||||||||||||    
T  14450756 gtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacagag 14450707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 24067263 - 24067304
Alignment:
Q  48 aaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    ||||||||  ||||||||||||||||| ||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgt 24067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 24067728 - 24067805
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||| ||| | ||||||||||| |  | ||||||||||| |||||| ||||||| || | ||||||||||||||||    
T  24067728 acgacattgataaggacacattgatatcggtaaaattttgagaaaatgtcataattaaatgaaatcacaagtgtcggt 24067805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 42665614 - 42665659
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||||    
T  42665614 gataaaattttgaaaagatgacatgattcaatgtaatcacatgtgt 42665659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 14373479 - 14373431
Alignment:
Q  45 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||||||   ||||||||||||||| ||||||||| ||||||||    
T  14373479 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggt 14373431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 17808564 - 17808512
Alignment:
Q  30 gacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 82  Q
    ||||| ||||||||||||||| ||||| | ||||| ||||||||| |||||||    
T  17808564 gacacgttgacacagataaaaatttgatagaatgatataattcaatgtaatca 17808512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 18512201 - 18512149
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    ||||| ||||||||||||| ||||| | ||||||||| ||||||||| |||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 1885551 - 1885675
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 115  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    | |  | || ||||||||    
T  1885551 acgacactgatacggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggt----gtcgtgttg-gtgtcgga 1885645  T
Q  116 caccaggacacaccttcaaccagaagtgtc 145  Q
    ||||||||||||| ||||| ||||||||||    
T  1885646 caccaggacacacgttcaatcagaagtgtc 1885675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 5937499 - 5937361
Alignment:
Q  19 acactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacac 118  Q
    |||||||||| ||||| |  |||| ||||||||||||| ||||||||||||||||| ||||||||||||||| ||   || |||||| | ||||||||||    
T  5937499 acactgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacac 5937400  T
Q  119 caggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    ||| | || |||||||   ||||||||||||||| ||||    
T  5937399 cagaatacgccttcaatatgaagtgtccgtgcaatagag 5937361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 25956446 - 25956564
Alignment:
Q  37 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaacc 136  Q
    ||||||| |||||||| ||||||  ||||||||||||| ||||||||||||||||||   ||||||||| | ||||||||| | |||||| ||||||| |    
T  25956446 tgacacaaataaaattgtgaaaa--tgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatc 25956542  T
Q  137 agaagtgtccgtgcaacagagc 158  Q
    |||||||||||||||| |||||    
T  25956543 agaagtgtccgtgcaatagagc 25956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 44317352 - 44317293
Alignment:
Q  31 acacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  44317352 acacgttgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagtgtc 44317293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 2144604 - 2144546
Alignment:
Q  30 gacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||| |||||    
T  2144604 gacacattgacaca--taaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 22801822 - 22801745
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||||| |||||||||| |  |||| ||| ||||||||| | ||||||||||||||  ||||||||||||||||||    
T  22801822 acgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggt 22801745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 48964119 - 48963995
Alignment:
Q  40 cacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac----------tggacacgatgcgtgtcggacaccaggacacacc 129  Q
    ||||||||||||| ||| |||||||||||||||||  ||||||||||||| |||            |||||||||| ||||||| ||||| ||||| |||    
T  48964119 cacagataaaattgtgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtaagtgtggacacgatacgtgtcgaacaccgggacatacc 48964020  T
Q  130 ttcaaccagaagtgtccgtgcaaca 154  Q
    ||||| ||||||||||| |||||||    
T  48964019 ttcaatcagaagtgtccatgcaaca 48963995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 35238252 - 35238192
Alignment:
Q  29 ggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||  |||||||| ||||    
T  35238252 ggacacattgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgt 35238192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 36013873 - 36013802
Alignment:
Q  23 tgacacggacacattgacacagataaaattttga-aaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||| ||||||||||||  ||||| | ||||| |||||||||||||||||| ||||||||| ||||||||    
T  36013873 tgacactgacacattgacaatgataataatttgagaaaaatgacataattcaatgtaatcacacgtgtcggt 36013802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 9050192 - 9050140
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||| |||||||||||||||||||||||||| |||||  |||||||| |||||    
T  9050192 gacatagataaaattttgaaaaaatgacatagttcaatataatcacatgtgtc 9050140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 2143909 - 2143866
Alignment:
Q  41 acagataaaattttgaaaaaatgacataattcaaagtaatcaca 84  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||    
T  2143909 acagattaaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 7438706 - 7438761
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||||    
T  7438706 gacacagttaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggt 7438761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 36196760 - 36196831
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    ||||| ||||||||||| | ||||||||  ||||||||||| ||||  |||||||||||  |||||||||||||    
T  36196760 acgaccctgacacggacgcgttgacaca--taaaattttgagaaaacaacataattcaacataatcacaagtgt 36196831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 37820086 - 37820132
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||||    
T  37820086 gataaaattttgaaaaaataacataatttaatgtaatcgcaagtgtc 37820132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 10702615 - 10702551
Alignment:
Q  25 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||||||||||| || || ||||||||||||| |||||||||| |||||| ||||| | |||||||    
T  10702615 acacggacacatcgatactgataaaattttgagaaaatgacat-attcaatgtaattataagtgtc 10702551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 38134467 - 38134410
Alignment:
Q  36 ttgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| ||||| | ||||| ||||||||||||||||| ||||||| | ||||||||    
T  38134467 ttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 21320026 - 21319951
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  21320026 acgacactgatatggacacattgacacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgtcg 21319951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 7621315 - 7621168
Alignment:
Q  17 cgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcgg-----tactggacacgatgcgtgt 111  Q
    ||||||||||| |||||| | ||||||||||||||||  ||||| |||||||||| || |||||||||||| ||||     ||   |||||||| | | |    
T  7621315 cgacactgacatggacacgtcgacacagataaaatttaaaaaaattgacataatttaatgtaatcacaagtatcggtgtcatatcagacacgatacttat 7621216  T
Q  112 cggacaccaggacacaccttcaaccagaagtgtccgtgcaacagagct 159  Q
    |||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  7621215 cggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagagct 7621168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 19167663 - 19167580
Alignment:
Q  11 cagagacgacactgacacggacacattgacacagataaaattttgaa-aaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||| ||||||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  19167663 cagacacgacactgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggt 19167580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 30080587 - 30080505
Alignment:
Q  11 cagagacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||| |||||| ||||||||| |  | ||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  30080587 cagacacgacaatgacacggaaatgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggt 30080505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 41558764 - 41558701
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaa 79  Q
    ||||||| ||||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||    
T  41558764 acgacacggacactgacacattgacacaaataataatttgagaaaatgacataattcaaagtaa 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 38784784 - 38784858
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||||||| ||||  |||||| | ||| ||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  38784784 acgacactaacactaacacatcggcaccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtc 38784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 10010561 - 10010609
Alignment:
Q  45 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcggt 10010609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 20763353 - 20763432
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatg--acataattcaaagtaatcacaagtgtcggt 93  Q
    |||||||||||||  |||||||||||| |||||  |||| |||||| |  ||||||||||| ||||||||||||||||||    
T  20763353 acgacactgacacaaacacattgacaccgataatttttttaaaaaaagttacataattcaacgtaatcacaagtgtcggt 20763432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 15294943 - 15294986
Alignment:
Q  50 attttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  15294943 attttgaaaaaatgacataattcaaggtaatcacaagtgccggt 15294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 15302512 - 15302576
Alignment:
Q  25 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    |||| ||||||| ||||  ||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  15302512 acacagacacatcgacaacgataaaattttgaaaaaatgac--aattcaaggtaatcacaagtgtcg 15302576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 24906359 - 24906304
Alignment:
Q  39 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggta 94  Q
    |||||||||| | ||||||||||||||||||||||  ||||| |||||||||||||    
T  24906359 acacagataataatttgaaaaaatgacataattcagtgtaattacaagtgtcggta 24906304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 9031919 - 9031879
Alignment:
Q  116 caccaggacacaccttcaaccagaagtgtccgtgcaacaga 156  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  9031919 caccaggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 42893346 - 42893448
Alignment:
Q  24 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccagga 123  Q
    ||||||||||||  ||||||| ||| | ||||||||||| ||||||| ||  ||||| ||||||||||||    ||||| |  |||||| ||||||||||    
T  42893346 gacacggacacaccgacacagctaataatttgaaaaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccagga 42893445  T
Q  124 cac 126  Q
    |||    
T  42893446 cac 42893448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 8420041 - 8420082
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  8420041 tttgaaaaaataacataattcaatgtaattacaagtgtcggt 8420082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 13287480 - 13287403
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| |||||  |||| | ||||||||||| | ||||||||||| ||||||||||  ||||  ||||||||||||    
T  13287480 acgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggt 13287403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 20260593 - 20260541
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    ||||| ||||||||||| |||||| |||||||||||||||| | ||||||||||    
T  20260593 gacaccgataaaattttaaaaaaa-gacataattcaaagtatttacaagtgtcg 20260541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 31084323 - 31084376
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||    
T  31084323 gacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcg 31084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 26915321 - 26915246
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    ||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||| || ||||||||||||||||    
T  26915321 acgacactgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 42874500 - 42874574
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||||||| |||||||||| | ||||| | ||| ||||||| ||||||||||||||||| |||||||||||||||    
T  42874500 acgacactaacacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 34074058 - 34073922
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 115  Q
    |||||||||| ||| |||||  ||||| |||||||||||||||||||||||||||| || ||||||| |||||||| ||   ||||||   ||||||| |    
T  34074058 acgacactgatacgaacacac-gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcgatatcagacacgtcacgtgtcgca 34073960  T
Q  116 caccaggacacaccttcaaccagaagtgtccgtgcaac 153  Q
    || || ||||| ||||||| || ||||||  |||||||    
T  34073959 catcatgacacgccttcaatcaaaagtgtttgtgcaac 34073922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  48 aaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 27733848 - 27733898
Alignment:
Q  39 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10497895 - 10497823
Alignment:
Q  18 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    ||||||||||| |||||   ||||| ||||||||||||| ||||| ||||||||  | |||||||||||||||    
T  10497895 gacactgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtc 10497823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 36450799 - 36450725
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 126  Q
    ||||||||||| ||| ||||||  ||||| |||||||| |||   |||||||| ||||||| |||||||||||||    
T  36450799 tttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacac 36450725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 2652319 - 2652391
Alignment:
Q  18 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    |||||| ||||||| |||| ||| | |||||| |||| | |||||||||||||| || ||||||||||||||||    
T  2652319 gacactaacacggatacatcgaccctgataaattttttagaaaatgacataatt-aatgtaatcacaagtgtcg 2652391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 18170563 - 18170486
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| ||||| |||||   ||||||  ||||| ||||||||||| ||||||||||| ||||| |||| |||||||    
T  18170563 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggt 18170486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 18634131 - 18634054
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| ||||| |||||   ||||||  ||||| ||||||||||| ||||||||||| ||||| |||| |||||||    
T  18634131 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggt 18634054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 22651954 - 22652031
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| ||||| |||||   ||||||| ||| | ||||||||||| |||||||||||  |||| ||||||||||||    
T  22651954 acgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggt 22652031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 24295190 - 24295141
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||||| ||| ||||||||| |||| || ||||||||||||||||||    
T  24295190 gataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggt 24295141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 31548338 - 31548297
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||    
T  31548338 tttgataaaatgacataattcaatgtaatcacatgtgtcggt 31548297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 5307048 - 5307115
Alignment:
Q  25 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||||||| | ||||| ||||| | |||||||| |||||||||||||| | ||||| ||||||||||    
T  5307048 acacggacacgtcgacactgataataatttgaaaa-atgacataattcaatgaaatcataagtgtcggt 5307115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 20873047 - 20873143
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtc 112  Q
    ||||||| ||||| |||||   |||| |||||| | ||||||||||| |||||||| |  ||||| ||||||||||||   ||||||||| ||||||    
T  20873047 acgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgatacgtgtc 20873143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 25566840 - 25566896
Alignment:
Q  37 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  25566840 tgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 25566896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 10367 - 10247
Alignment:
Q  27 acggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 126  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||  ||        ||| |||   |||| |||||||||||||||| ||||||||    
T  10367 acggacacattgacacagataaaattttgacaaaatgacattattcaa--ta--------tgttggtgtcggacgcgatgcgtgtcggacagcaggacac 10278  T
Q  127 accttcaaccagaagtgtccgtgcaacagag 157  Q
    |||||||| |||||||||| |||||| ||||    
T  10277 accttcaatcagaagtgtctgtgcaagagag 10247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 8954 - 9061
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacg--atgcgtgtcggacaccaggacacaccttcaaccagaag 141  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    | || |   || |||||||||||| |||||| ||||||| ||||||    
T  8954 gataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggt----gtcatgtcgtgtgtgtcggacaccgggacacgccttcaatcagaag 9049  T
Q  142 tgtccgtgcaac 153  Q
    |||| |||||||    
T  9050 tgtctgtgcaac 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 14338536 - 14338454
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 126  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||    |||||||  ||| ||||||||| ||||||    
T  14338536 gataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcagacacgacacgtatcggacaccgggacac 14338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 11093558 - 11093614
Alignment:
Q  26 cacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 82  Q
    |||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||    
T  11093558 cacggacacatttacactgataataatttgaaaaaatgacataattcaaagtaatca 11093614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 34834965 - 34834869
Alignment:
Q  59 aaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacaga 156  Q
    ||||||||||||||||  ||||||| ||| |||||   ||||  ||| | ||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  34834965 aaatgacataattcaat-taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 49179774 - 49179719
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||| ||||||||||||| ||| ||||||||||| | ||||||||||||||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggt 49179719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 20503479 - 20503553
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 126  Q
    ||||||||||||||||||||||  ||||| ||||||||||||  |||||||||  | |||| |||||| ||||||    
T  20503479 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacac 20503553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 10954966 - 10955032
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacac 118  Q
    ||||||||||| ||||||||||  ||||||||||||||||||   ||||||||  |||||| |||||    
T  10954966 tttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacac 10955032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 12704715 - 12704663
Alignment:
Q  39 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    |||| ||||| | ||||||||||||||||||||||| ||||||| | ||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcg 12704663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 26508109 - 26508165
Alignment:
Q  37 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  26508109 tgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 26508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 41319383 - 41319327
Alignment:
Q  24 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaat 80  Q
    ||||||||||| | |||||  |||| | ||||||||||||||||||||||| |||||    
T  41319383 gacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 24462329 - 24462280
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagt 87  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  24462329 gacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 40686832 - 40686761
Alignment:
Q  23 tgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggta 94  Q
    |||||| ||||| | ||||  ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  40686832 tgacactgacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgtcggta 40686761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 18950996 - 18951041
Alignment:
Q  108 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaaca 154  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  18950996 gtgtcggacaccaggacacaccttcaatcagaagtgt-cgtgcaaca 18951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 38078733 - 38078665
Alignment:
Q  25 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||| ||||| | ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||||    
T  38078733 acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggt 38078665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 46748987 - 46748915
Alignment:
Q  18 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    |||||||||||||||||   |||||   |||||||||||||||| |||||| ||||| |||||||||| ||||    
T  46748987 gacactgacacggacacgccgacaccattaaaattttgaaaaaacgacatagttcaatgtaatcacaaatgtc 46748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  48 aaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    ||||||||| ||||||||||||||||| |||||||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 21378556 - 21378633
Alignment:
Q  16 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    ||||||| |||| |||||||  ||||||| ||| |  |||||||||| ||||||||||  ||||| ||||||||||||    
T  21378556 acgacacggacatggacacaccgacacagctaataaattgaaaaaattacataattcagtgtaattacaagtgtcggt 21378633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 24176820 - 24176873
Alignment:
Q  39 acacagataaaattttga-aaaaatgacataattcaaagtaatcacaagtgtcg 91  Q
    |||| ||||||||||||| ||||||||||| ||| || ||||||||||||||||    
T  24176820 acaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgtcg 24176873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 24577259 - 24577190
Alignment:
Q  24 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 93  Q
    |||||||||||  |||||||  ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  24577259 gacacggacacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 24577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 28170389 - 28170433
Alignment:
Q  45 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 90  Q
    ||||||||||||||| |||||||||||||| ||||| |||||||||    
T  28170389 ataaaattttgaaaa-atgacataattcaatgtaataacaagtgtc 28170433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 16925593 - 16925661
Alignment:
Q  18 gacactgacacggacacattgacacagataaaattttg-aaaaaatgacataattcaaagtaatcacaa 85  Q
    ||||||||||||||||  | || || |||||||||||| ||||||| ||| ||||||| ||||||||||    
T  16925593 gacactgacacggacatgtcgataccgataaaattttgaaaaaaataacacaattcaatgtaatcacaa 16925661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 507 - 429
Alignment:
Q  52 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacct 130  Q
    ||||||||||| ||| ||||||  ||||| ||||||||||||   |||||||| ||||||| |||||| ||||||||||    
T  507 tttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacct 429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 18181 - 18116
Alignment:
Q  24 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    ||||| ||||| | ||||| ||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  18181 gacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgt 18116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 70278 - 70365
Alignment:
Q  38 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggaca 125  Q
    ||||||| ||| | ||||||||||| ||||||||||  ||||| | ||||||||||   ||||||||  |||||| ||||||||||||    
T  70278 gacacagttaataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggaca 70365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 8691 - 8642
Alignment:
Q  108 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 157  Q
    ||||| |||||| |||||  ||||||| ||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacagag 8642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 8750 - 8705
Alignment:
Q  44 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 89  Q
    ||||||||||||| |||||||||| |||||| |||| |||||||||    
T  8750 gataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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